WormBase Tree Display for Gene: WBGene00001702
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| WBGene00001702 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Person_evidence | WBPerson83 | ||||||||
| SMap | S_parent | Sequence | W05E7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grd-13 | Person_evidence | WBPerson83 | |||||
| Sequence_name | W05E7.3 | ||||||||
| Molecular_name | W05E7.3 | ||||||||
| W05E7.3.1 | |||||||||
| CE34104 | |||||||||
| Other_name | CELE_W05E7.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | grd-13 | ||||||||
| DB_info | Database | AceView | gene | 4E203 | |||||
| WormQTL | gene | WBGene00001702 | |||||||
| WormFlux | gene | WBGene00001702 | |||||||
| NDB | locus_tag | CELE_W05E7.3 | |||||||
| NCBI | gene | 3565619 | |||||||
| RefSeq | protein | NM_001028251.5 | |||||||
| TREEFAM | TREEFAM_ID | TF316923 | |||||||
| TrEMBL | UniProtAcc | Q7Z2A9 | |||||||
| UniProt_GCRP | UniProtAcc | Q7Z2A9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grd | ||||||||
| Allele (27) | |||||||||
| Strain | WBStrain00003084 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (19) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | grd-13 encodes a hedgehog-like protein, with an N-terminal signalsequence and a C-terminal Ground domain; GRD-13 is expressed inposterior intestine and seam cells; the Ground domain is predicted toform a cysteine-crosslinked protein involved in intercellularsignalling, and it has subtle similarity to the N-terminal Hedge domainof HEDGEHOG proteins; GRD-13 is required for normal growth to full size,locomotion, and vulval morphogenesis; all of these requirements mayreflect common defects in cholesterol-dependent hedgehog-like signallingor in vesicle trafficking. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Expressed in intestine; isthmus; metacorpus; procorpus; and rectal epithelium. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W05E7.3 | |||||||
| Corresponding_transcript | W05E7.3.1 | ||||||||
| Other_sequence | CJC08773_1 | ||||||||
| Associated_feature | WBsf645872 | ||||||||
| WBsf995961 | |||||||||
| WBsf228099 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00103567 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00077002 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075992 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077025 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019622 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1246 | ||||||||
| Chronogram1882 | |||||||||
| Expr4437 | |||||||||
| Expr6840 | |||||||||
| Expr1023392 | |||||||||
| Expr1031017 | |||||||||
| Expr1158367 | |||||||||
| Expr2012227 | |||||||||
| Expr2030463 | |||||||||
| Drives_construct | WBCnstr00004501 | ||||||||
| WBCnstr00004513 | |||||||||
| WBCnstr00008668 | |||||||||
| WBCnstr00008778 | |||||||||
| WBCnstr00012000 | |||||||||
| WBCnstr00036755 | |||||||||
| Construct_product | WBCnstr00036755 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (194) | |||||||||
| WBProcess | WBbiopr:00000123 | ||||||||
| Map_info | Map | IV | Position | -4.17648 | Error | 0.038596 | |||
| Positive | Positive_clone | W05E7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00025797 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00028754 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | grd-13 contains only ground domain. grd-3, grd-10, and grd-13 form a cluster, grd-3 and grd-13 are paralogous to the grd-4 and grd-14 cluster | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
