WormBase Tree Display for Gene: WBGene00001726
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| WBGene00001726 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C56A3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-17 | Person_evidence | WBPerson83 | |||||
| Sequence_name | C56A3.1 | ||||||||
| Molecular_name | C56A3.1 | ||||||||
| C56A3.1.1 | |||||||||
| CE09029 | |||||||||
| Other_name | CELE_C56A3.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | grl-17 | ||||||||
| DB_info | Database | AceView | gene | 5O42 | |||||
| WormQTL | gene | WBGene00001726 | |||||||
| WormFlux | gene | WBGene00001726 | |||||||
| NDB | locus_tag | CELE_C56A3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001726|UniProtKB=Q18880 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 183855 | |||||||
| RefSeq | protein | NM_073958.3 | |||||||
| TrEMBL | UniProtAcc | Q18880 | |||||||
| UniProt_GCRP | UniProtAcc | Q18880 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00003430 | ||||||||
| WBStrain00003431 | |||||||||
| WBStrain00032913 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (20) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-17 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central proline-rich low-complexity region, and a C-terminalGround-like (Grl) domain; GRL-17 is expressed in pharynx, rectalepithelium, amphid socket cells, larval arcade cells, and larvalhypodermis; the Grl domain is predicted to form a cysteine-crosslinkedprotein involved in intercellular signalling, and it has subtlesimilarity to the N-terminal Hedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Expressed in head and terminal bulb. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C56A3.1 | |||||||
| Corresponding_transcript | C56A3.1.1 | ||||||||
| Other_sequence (25) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00082418 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00066595 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012447 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012453 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043251 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082703 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4456 | ||||||||
| Expr5594 | |||||||||
| Expr5595 | |||||||||
| Expr1015714 | |||||||||
| Expr1031031 | |||||||||
| Expr1147231 | |||||||||
| Expr2012251 | |||||||||
| Expr2030487 | |||||||||
| Drives_construct | WBCnstr00003894 | ||||||||
| WBCnstr00003895 | |||||||||
| WBCnstr00012021 | |||||||||
| WBCnstr00036735 | |||||||||
| Construct_product | WBCnstr00036735 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | V | Position | 5.45647 | Error | 0.00211 | |||
| Positive | Positive_clone | C56A3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00029087 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
