WormBase Tree Display for Gene: WBGene00001818
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| WBGene00001818 | SMap | S_parent | Sequence | Y57G11C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | haf-8 | Person_evidence | WBPerson36 | |||||
| Sequence_name | Y57G11C.1 | ||||||||
| Molecular_name | Y57G11C.1 | ||||||||
| Y57G11C.1.1 | |||||||||
| CE14926 | |||||||||
| Other_name | CELE_Y57G11C.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | haf-8 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | haf | ||||||||
| Allele (127) | |||||||||
| Strain | WBStrain00035485 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (31) | |||||||||
| Paralog (23) | |||||||||
| Structured_description | Concise_description | The haf-8 gene encodes a homolog of human CHM, which when mutated leads to choroideraemia (OMIM:303100). | Paper_evidence | WBPaper00004103 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; autoimmune disease (multiple); bronchial disease (multiple); and systemic scleroderma (multiple). Is an ortholog of human ABCB9 (ATP binding cassette subfamily B member 9); TAP1 (transporter 1, ATP binding cassette subfamily B member); and TAP2 (transporter 2, ATP binding cassette subfamily B member). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (27) | ||||||||
| Molecular_info | Corresponding_CDS | Y57G11C.1 | |||||||
| Corresponding_transcript | Y57G11C.1.1 | ||||||||
| Other_sequence | PSC04308_1 | ||||||||
| GW409415.1 | |||||||||
| BI773202.1 | |||||||||
| MCC00597_1 | |||||||||
| GW407533.1 | |||||||||
| SSC06384_1 | |||||||||
| Associated_feature | WBsf998618 | ||||||||
| WBsf998619 | |||||||||
| WBsf1018680 | |||||||||
| WBsf1018681 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057680 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021134 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3350 | ||||||||
| Expr1026275 | |||||||||
| Expr1161089 | |||||||||
| Drives_construct | WBCnstr00011347 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (32) | |||||||||
| Interaction (78) | |||||||||
| Map_info | Map | IV | Position | 12.3598 | Error | 0.004209 | |||
| Positive | Positive_clone | Y57G11C | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4393 | |||||||
| 5531 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027644 | ||||||||
| WBPaper00028961 | |||||||||
| WBPaper00028970 | |||||||||
| WBPaper00031484 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from Sheps JA and Baillie DL [021008 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
