WormBase Tree Display for Gene: WBGene00001913
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| WBGene00001913 | SMap | S_parent | Sequence | F45F2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | his-39 | Person_evidence | WBPerson160 | |||||
| Sequence_name | F45F2.2 | ||||||||
| Molecular_name | F45F2.2 | ||||||||
| F45F2.2.1 | |||||||||
| CE52308 | |||||||||
| Other_name | his-23 | Person_evidence | WBPerson160 | ||||||
| CELE_F45F2.2 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | his-39 | ||||||||
| DB_info | Database | AceView | gene | 5J17 | |||||
| WormFlux | gene | WBGene00001913 | |||||||
| NDB | locus_tag | CELE_F45F2.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001913|UniProtKB=Q22979 | |||||||
| family | PTHR23428 | ||||||||
| NCBI | gene | 191681 | |||||||
| RefSeq | protein | NM_072800.5 | |||||||
| TrEMBL | UniProtAcc | Q22979 | |||||||
| UniProt_GCRP | UniProtAcc | Q22979 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 18 Jan 2008 09:16:59 | WBPerson2970 | Event | Acquires_merge | WBGene00001897 | ||||
| Name_change | Other_name | his-23 | |||||||
| Acquires_merge | WBGene00001897 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | his | ||||||||
| Allele | WBVar01499903 | ||||||||
| WBVar01500129 | |||||||||
| WBVar01499056 | |||||||||
| WBVar00464834 | |||||||||
| WBVar01031616 | |||||||||
| WBVar01499316 | |||||||||
| Strain | WBStrain00034769 | ||||||||
| In_cluster | HIS2_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00109664 | ||||||||
| 00109665 | |||||||||
| 00109666 | |||||||||
| 00109667 | |||||||||
| Ortholog (133) | |||||||||
| Paralog (16) | |||||||||
| Structured_description | Concise_description | his-39 encodes an H2B histone; by homology, HIS-39 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; loss of his-39 function via RNA-mediated interference (RNAi) does not result in any abnormalities; his-39 is a replication-dependent histone locus that resides in the HIS2 cluster on chromosome V. | Paper_evidence | WBPaper00005142 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome. Is an ortholog of human H2BK1 (H2B.K variant histone 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F45F2.2 | |||||||
| Corresponding_CDS_history | F45F2.2:wp125 | ||||||||
| F45F2.2:wp261 | |||||||||
| Corresponding_transcript | F45F2.2.1 | ||||||||
| Other_sequence | DAC02238_1 | ||||||||
| CK726089.1 | |||||||||
| Acan_isotig18293 | |||||||||
| DA05374 | |||||||||
| Experimental_info | RNAi_result (28) | ||||||||
| Expr_pattern | Expr1017581 | ||||||||
| Expr1031119 | |||||||||
| Expr1151267 | |||||||||
| Expr1200219 | |||||||||
| Expr2012455 | |||||||||
| Expr2030691 | |||||||||
| Drives_construct | WBCnstr00036601 | ||||||||
| Construct_product | WBCnstr00036601 | ||||||||
| Microarray_results | SMD_F45F2.2 | ||||||||
| A_12_P154390 | |||||||||
| Aff_F45F2.2 | |||||||||
| GPL8673_F45F2_2P00251 | |||||||||
| GPL8673_F45F2_2P00257 | |||||||||
| GPL8673_F45F2_2P00261 | |||||||||
| Expression_cluster (38) | |||||||||
| Interaction | WBInteraction000348591 | ||||||||
| WBInteraction000553873 | |||||||||
| WBInteraction000555150 | |||||||||
| WBInteraction000558804 | |||||||||
| WBInteraction000580055 | |||||||||
| Map_info | Map | V | Position | 1.44151 | Error | 0.000477 | |||
| Positive | Positive_clone | F45F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002441 | ||||||||
| WBPaper00005142 | |||||||||
| WBPaper00031307 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Pseudogene tag removed because the corresponding sequence object for this gene has not been annotated as a pseudogene. This discrepancy may reflect that the sequence object was once a pseudogene and has subsequently been converted into a real gene (without this Locus object being updated). Alternatively it may be that this gene is a pseudogene in another C. elegans strain, but not in the sequenced N2 strain. [krb 030806] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
