WormBase Tree Display for Gene: WBGene00001921
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| WBGene00001921 | SMap | S_parent | Sequence | B0035 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | his-47 | Person_evidence | WBPerson160 | |||||
| Sequence_name | B0035.7 | ||||||||
| Molecular_name | B0035.7 | ||||||||
| B0035.7.1 | |||||||||
| CE04501 | |||||||||
| Other_name | his 12 | Accession_evidence | EMBL | X15633 | |||||
| CELE_B0035.7 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | his-47 | ||||||||
| DB_info | Database | AceView | gene | 4M88 | |||||
| WormFlux | gene | WBGene00001921 | |||||||
| NDB | locus_tag | CELE_B0035.7 | |||||||
| NCBI | gene | 178048 | |||||||
| RefSeq | protein | NM_069730.6 | |||||||
| SwissProt | UniProtAcc | P09588 | |||||||
| UniProt_GCRP | UniProtAcc | P09588 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | his | ||||||||
| Allele | WBVar01500079 | ||||||||
| WBVar01498996 | |||||||||
| WBVar01499925 | |||||||||
| WBVar01498645 | |||||||||
| WBVar01499585 | |||||||||
| WBVar01499586 | |||||||||
| WBVar01500245 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00109695 | ||||||||
| 00109696 | |||||||||
| 00109697 | |||||||||
| 00109698 | |||||||||
| Ortholog (205) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | his-47 encodes an H2A histone; by homology, HIS-47 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-47 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. | Paper_evidence | WBPaper00005142 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome. Human ortholog(s) of this gene implicated in oral mucosa leukoplakia and oral squamous cell carcinoma. Is an ortholog of human H2AX (H2A.X variant histone). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050866 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4739) | ||||
| DOID:9655 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4739) | ||||||
| Molecular_info | Corresponding_CDS | B0035.7 | |||||||
| Corresponding_transcript | B0035.7.1 | ||||||||
| Other_sequence | FD515840.1 | ||||||||
| EV852023.1 | |||||||||
| JI169004.1 | |||||||||
| DVC00243_1 | |||||||||
| Associated_feature | WBsf230861 | ||||||||
| WBsf230862 | |||||||||
| Experimental_info | RNAi_result (27) | ||||||||
| Expr_pattern | Expr1023955 | ||||||||
| Expr1142888 | |||||||||
| Expr2012461 | |||||||||
| Expr2030699 | |||||||||
| Drives_construct | WBCnstr00036594 | ||||||||
| Construct_product | WBCnstr00036594 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction (265) | |||||||||
| Map_info | Map | IV | Position | 4.95824 | |||||
| Positive | Positive_clone | B0035 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032236 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
