WormBase Tree Display for Gene: WBGene00001965
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WBGene00001965 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C17C3 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | hlh | ||||||
Allele (21) | |||||||
Strain | WBStrain00032036 | ||||||
WBStrain00033856 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (11) | |||||||
Ortholog (17) | |||||||
Paralog | WBGene00001964 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
WBGene00001968 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
WBGene00001967 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
WBGene00001966 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | hlh-26 encodes a REF-1-like protein with two bHLH domains that represses lag-2 transcription in ABa descendants (in response to a Notch signal, redundantly with REF-1, HLH-27, HLH-29, and perhaps HLH-28) and tbx-37 transcription in EMS descendants (independently of Notch, redundantly with REF-1, HLH-27, HLH-29, and perhaps HLH-28); lag-2 repression by HLH-26 may require UNC-37; HLH-26's paralogs include HLH-25 through HLH-29 and (more distantly) REF-1; HLH-26 is not visibly expressed in EMS descendants, and has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00025235 | |||
WBPaper00031196 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 18 Apr 2008 00:00:00 | ||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in ABpla; ABplp; ABpra; and ABprp. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C17C3.8 | |||||
Corresponding_transcript | C17C3.8.1 | ||||||
Associated_feature | WBsf978584 | ||||||
Transcription_factor | WBTranscriptionFactor000073 | ||||||
Experimental_info | RNAi_result | WBRNAi00084010 | Inferred_automatically | RNAi_primary | |||
WBRNAi00028995 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040786 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00022289 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107447 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr8069 | ||||||
Expr10328 | |||||||
Expr10329 | |||||||
Expr1017022 | |||||||
Expr1144825 | |||||||
Expr2012501 | |||||||
Expr2030740 | |||||||
Drives_construct | WBCnstr00005216 | ||||||
WBCnstr00015259 | |||||||
WBCnstr00036555 | |||||||
Construct_product | WBCnstr00005216 | ||||||
WBCnstr00036555 | |||||||
Regulate_expr_cluster | WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium | ||||||
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium | |||||||
Microarray_results (17) | |||||||
Expression_cluster (47) | |||||||
Interaction (145) | |||||||
Map_info | Map | II | Position | -1.19632 | Error | 0.002366 | |
Positive | Positive_clone | C17C3 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00025235 | ||||||
WBPaper00027287 | |||||||
WBPaper00027309 | |||||||
WBPaper00029033 | |||||||
WBPaper00030887 | |||||||
WBPaper00031196 | |||||||
WBPaper00034761 | |||||||
WBPaper00062585 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |