WormBase Tree Display for Gene: WBGene00002045
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| WBGene00002045 | Evidence | Paper_evidence | WBPaper00006037 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C56C10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | icd-1 | Person_evidence | WBPerson539 | |||||
| Sequence_name | C56C10.8 | ||||||||
| Molecular_name | C56C10.8 | ||||||||
| C56C10.8.1 | |||||||||
| CE02573 | |||||||||
| Other_name | CELE_C56C10.8 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | icd-1 | ||||||||
| DB_info | Database | AceView | gene | 2G878 | |||||
| WormQTL | gene | WBGene00002045 | |||||||
| WormFlux | gene | WBGene00002045 | |||||||
| NDB | locus_tag | CELE_C56C10.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002045|UniProtKB=Q18885 | |||||||
| family | PTHR10351 | ||||||||
| NCBI | gene | 174090 | |||||||
| RefSeq | protein | NM_062935.10 | |||||||
| SwissProt | UniProtAcc | Q18885 | |||||||
| TREEFAM | TREEFAM_ID | TF317546 | |||||||
| UniProt_GCRP | UniProtAcc | Q18885 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | icd | ||||||||
| Allele (24) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP2252 | ||||||||
| Ortholog (45) | |||||||||
| Structured_description | Concise_description | icd-1 encodes the C. elegans ortholog of the beta-subunit of the nascent polypeptide-associated complex (betaNAC); during development, icd-1 activity is required for prevention of ced-4-dependent, but ced-3-independent, programmed cell death and for normal embryonic development; ICD-1 is widely expressed throughout development and colocalizes primarily with mitochondria. | Paper_evidence | WBPaper00006037 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 06 Apr 2007 00:00:00 | ||||||||
| Automated_description | Involved in embryo development and negative regulation of apoptotic process. Located in mitochondrion. Expressed in several structures, including germ line; intestine; pharynx; preanal ganglion; and somatic nervous system. Is an ortholog of human BTF3 (basic transcription factor 3) and BTF3L4 (basic transcription factor 3 like 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C56C10.8 | |||||||
| Corresponding_transcript | C56C10.8.1 | ||||||||
| Other_sequence (186) | |||||||||
| Associated_feature | WBsf665625 | ||||||||
| WBsf223205 | |||||||||
| WBsf223206 | |||||||||
| WBsf223207 | |||||||||
| WBsf223208 | |||||||||
| WBsf223209 | |||||||||
| Transcription_factor | WBTranscriptionFactor000553 | ||||||||
| Experimental_info | RNAi_result (63) | ||||||||
| Expr_pattern | Expr2667 | ||||||||
| Expr11908 | |||||||||
| Expr1018160 | |||||||||
| Expr1031199 | |||||||||
| Expr1147249 | |||||||||
| Expr2012662 | |||||||||
| Expr2030898 | |||||||||
| Drives_construct | WBCnstr00036496 | ||||||||
| Construct_product | WBCnstr00019683 | ||||||||
| WBCnstr00036496 | |||||||||
| Antibody | WBAntibody00000662 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (141) | |||||||||
| Interaction (258) | |||||||||
| Map_info | Map | II | Position | -0.108008 | Error | 0.002195 | |||
| Positive | Positive_clone | C56C10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (31) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
