WormBase Tree Display for Gene: WBGene00002141
expand all nodes | collapse all nodes | view schema
| WBGene00002141 | Evidence | Paper_evidence | WBPaper00002950 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_I | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | inx-19 | Person_evidence | WBPerson247 | |||||
| Sequence_name | T16H5.1 | ||||||||
| Molecular_name | T16H5.1a | ||||||||
| T16H5.1a.1 | |||||||||
| CE30834 | |||||||||
| T16H5.1b | |||||||||
| CE33183 | |||||||||
| T16H5.1a.2 | |||||||||
| T16H5.1b.1 | |||||||||
| Other_name | opu-19 | ||||||||
| nsy-5 | Paper_evidence | WBPaper00029404 | |||||||
| Person_evidence | WBPerson42 | ||||||||
| CELE_T16H5.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | inx-19 | ||||||||
| DB_info | Database | AceView | gene | 1D20 | |||||
| WormQTL | gene | WBGene00002141 | |||||||
| WormFlux | gene | WBGene00002141 | |||||||
| NDB | locus_tag | CELE_T16H5.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002141|UniProtKB=O61715 | |||||||
| family | PTHR11893 | ||||||||
| NCBI | gene | 171805 | |||||||
| RefSeq | protein | NM_058582.8 | |||||||
| NM_001381412.2 | |||||||||
| SwissProt | UniProtAcc | O61715 | |||||||
| UniProt_GCRP | UniProtAcc | O61715 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 13 Jun 2007 17:05:49 | WBPerson2970 | Name_change | Other_name | nsy-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | inx | ||||||||
| Allele (333) | |||||||||
| Legacy_information | [Barnes TM] opu for OPUS protein. | ||||||||
| Strain | WBStrain00005278 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (27) | |||||||||
| Ortholog (37) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | inx-19 encodes an innexin, proteins that form gap junction channels; inx-19 functions in parallel with the NSY-4 claudin to specify the AWC chemosensory neuron ON fate; in specifying the AWC on fate, inx-19 appears to function cell autonomously; inx-19 also regulates body size and growth. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00029404 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 02 Sep 2011 00:00:00 | ||||||||
| Automated_description | Enables calcium channel inhibitor activity; gap junction hemi-channel activity; and protein kinase inhibitor activity. Involved in determination of left/right asymmetry in nervous system and intercellular transport. Located in gap junction and neuronal cell body membrane. Expressed in several structures, including K' cell; head neurons; hermaphrodite distal tip cell; lumbar neurons; and pharyngeal neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T16H5.1a | |||||||
| T16H5.1b | |||||||||
| Corresponding_transcript | T16H5.1a.1 | ||||||||
| T16H5.1a.2 | |||||||||
| T16H5.1b.1 | |||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf648972 | ||||||||
| WBsf663951 | |||||||||
| WBsf663952 | |||||||||
| WBsf982876 | |||||||||
| WBsf982877 | |||||||||
| WBsf982878 | |||||||||
| WBsf1009340 | |||||||||
| WBsf1009341 | |||||||||
| WBsf1009342 | |||||||||
| WBsf219034 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00066440 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00002207 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003437 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004223 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053441 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (12) | |||||||||
| Drives_construct (16) | |||||||||
| Construct_product | WBCnstr00000810 | ||||||||
| WBCnstr00006467 | |||||||||
| WBCnstr00012176 | |||||||||
| WBCnstr00015578 | |||||||||
| WBCnstr00015579 | |||||||||
| WBCnstr00015580 | |||||||||
| WBCnstr00023066 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction (12) | |||||||||
| Anatomy_function | WBbtf0524 | ||||||||
| WBbtf0525 | |||||||||
| WBbtf0526 | |||||||||
| WBbtf0527 | |||||||||
| WBbtf0528 | |||||||||
| WBbtf0529 | |||||||||
| WBbtf0530 | |||||||||
| WBbtf0531 | |||||||||
| WBbtf0532 | |||||||||
| WBbtf0533 | |||||||||
| Map_info | Map | I | Position | -8.61155 | Error | 0.034051 | |||
| Positive | Positive_clone | T16H5 | Person_evidence | WBPerson43 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 5249 | |||||||
| 4238 | |||||||||
| 5304 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (27) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
