WormBase Tree Display for Gene: WBGene00002985
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| WBGene00002985 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C29A12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | lig-1 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | C29A12.3 | ||||||||
| Molecular_name | C29A12.3a | ||||||||
| C29A12.3a.1 | |||||||||
| CE37480 | |||||||||
| C29A12.3b | |||||||||
| CE37481 | |||||||||
| C29A12.3b.1 | |||||||||
| Other_name | CELE_C29A12.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | lig-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lig | ||||||||
| Allele (34) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00010626 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00002986 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022237 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | lig-1 encodes a putative ATP-dependent DNA ligase, based on homology; lig-1 may be one of the direct targets of the daf-16 forkhead transcription factor, based on chromatin immunoprecipitation (ChIP) studies. | Paper_evidence | WBPaper00027009 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 19 Feb 2013 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA ligase (ATP) activity. Predicted to be involved in DNA ligation and Okazaki fragment processing involved in mitotic DNA replication. Predicted to be located in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in inherited metabolic disorder and primary immunodeficiency disease. Is an ortholog of human LIG1 (DNA ligase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6598) | ||||
| DOID:655 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6598) | ||||||
| Molecular_info | Corresponding_CDS | C29A12.3a | |||||||
| C29A12.3b | |||||||||
| Corresponding_CDS_history | C29A12.3:wp49 | ||||||||
| C29A12.3a:wp132 | |||||||||
| C29A12.3b:wp132 | |||||||||
| Corresponding_transcript | C29A12.3a.1 | ||||||||
| C29A12.3b.1 | |||||||||
| Other_sequence (56) | |||||||||
| Associated_feature | WBsf647199 | ||||||||
| WBsf1001198 | |||||||||
| WBsf1001199 | |||||||||
| WBsf1001200 | |||||||||
| WBsf1001201 | |||||||||
| WBsf1020354 | |||||||||
| WBsf1020355 | |||||||||
| WBsf232421 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00071564 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041439 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110407 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007593 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078459 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024665 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110406 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078941 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008458 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110405 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019333 | ||||||||
| Expr1031384 | |||||||||
| Expr1145468 | |||||||||
| Expr2013149 | |||||||||
| Expr2031381 | |||||||||
| Drives_construct | WBCnstr00036305 | ||||||||
| Construct_product | WBCnstr00036305 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (163) | |||||||||
| Interaction (248) | |||||||||
| Map_info | Map | V | Position | 2.81975 | Error | 0.001231 | |||
| Positive | Positive_clone | C29A12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005654 | ||||||||
| WBPaper00005745 | |||||||||
| WBPaper00026722 | |||||||||
| WBPaper00027009 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065149 | |||||||||
| Remark | Sequence connection from [Boulton S, Vidal M] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
