WormBase Tree Display for Gene: WBGene00003275
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| WBGene00003275 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K02B9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-47 | Person_evidence | WBPerson18 | |||||
| Sequence_name | K02B9.5 | ||||||||
| Molecular_name | K02B9.5 | ||||||||
| K02B9.5a | |||||||||
| K02B9.5b | |||||||||
| Other_name | cel-mir-47 | Remark | miRBase V21 import | ||||||
| Cel-Mir-281-P4 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_K02B9.5 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-47 | ||||||||
| DB_info | Database | miRBase | acc | MI0000018 | |||||
| SignaLink | mirna | cel-mir-47 | |||||||
| MirGeneDB | cel | Cel-Mir-281-P4 | |||||||
| NDB | locus_tag | CELE_K02B9.5 | |||||||
| NCBI | gene | 259946 | |||||||
| RefSeq | protein | NR_001268.2 | |||||||
| RNAcentral | URSid | URS0000181F65 | |||||||
| URS00003975CA | |||||||||
| URS00004DA4E6 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499887 | ||||||||
| WBVar01499519 | |||||||||
| WBVar01499888 | |||||||||
| WBVar01499710 | |||||||||
| WBVar00145574 | |||||||||
| WBVar01498960 | |||||||||
| WBVar01500067 | |||||||||
| Strain | WBStrain00027501 | ||||||||
| WBStrain00035682 | |||||||||
| WBStrain00051621 | |||||||||
| In_cluster | MIR-281 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-47 encodes a microRNA, a small non-protein coding RNA and is conserved in C. briggsae; mir-47 is expressed constitutively throughout development; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of mir-47 is not known. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00005825 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 18 Jan 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including hsf-1; eat-2; and prg-1 based on RNA-seq studies. Is affected by four chemicals including nicotine; multi-walled carbon nanotube; and Microcystin-LR based on quantitative PCR; RNA-seq; and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | K02B9.5 | |||||||
| K02B9.5a | |||||||||
| K02B9.5b | |||||||||
| Other_sequence | AJ487571 | ||||||||
| Associated_feature | WBsf979136 | ||||||||
| Experimental_info | Expr_pattern | Expr2480 | |||||||
| Expr8454 | |||||||||
| Drives_construct | WBCnstr00005509 | ||||||||
| WBCnstr00016905 | |||||||||
| Construct_product | WBCnstr00042629 | ||||||||
| Expression_cluster (26) | |||||||||
| Interaction | WBInteraction000504653 | ||||||||
| WBInteraction000541192 | |||||||||
| WBInteraction000541265 | |||||||||
| WBInteraction000542162 | |||||||||
| WBInteraction000544770 | |||||||||
| Map_info | Map | X | Position | 15.2411 | Error | 0.041431 | |||
| Positive | Positive_clone | K02B9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4961 | |||||||
| 4285 | |||||||||
| 4827 | |||||||||
| 4859 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004927 | ||||||||
| WBPaper00005825 | |||||||||
| WBPaper00005879 | |||||||||
| WBPaper00005932 | |||||||||
| WBPaper00031031 | |||||||||
| WBPaper00031335 | |||||||||
| WBPaper00032329 | |||||||||
| WBPaper00035664 | |||||||||
| WBPaper00061786 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
