WormBase Tree Display for Gene: WBGene00003300
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| WBGene00003300 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F53G2 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-72 | Person_evidence | WBPerson18 | |||||
| Sequence_name | F53G2.9 | ||||||||
| Molecular_name | F53G2.9 | ||||||||
| F53G2.9a | |||||||||
| F53G2.9b | |||||||||
| Other_name | cel-mir-72 | Remark | miRBase V21 import | ||||||
| Cel-Mir-31 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_F53G2.9 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | mir-72 | ||||||||
| DB_info | Database | miRBase | acc | MI0000043 | |||||
| SignaLink | mirna | cel-mir-72 | |||||||
| MirGeneDB | cel | Cel-Mir-31 | |||||||
| NDB | locus_tag | CELE_F53G2.9 | |||||||
| NCBI | gene | 259937 | |||||||
| RefSeq | protein | NR_000918.2 | |||||||
| RNAcentral | URSid | URS000003AB9C | |||||||
| URS00000F8235 | |||||||||
| URS00001717D7 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01500106 | |||||||||
| WBVar00359336 | |||||||||
| WBVar02124326 | |||||||||
| WBVar01497402 | |||||||||
| WBVar00145573 | |||||||||
| WBVar00712108 | |||||||||
| WBVar00712109 | |||||||||
| WBVar00712110 | |||||||||
| WBVar00090809 | |||||||||
| Strain | WBStrain00027420 | ||||||||
| WBStrain00027574 | |||||||||
| WBStrain00035679 | |||||||||
| In_cluster | MIR-31 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-72 encodes a microRNA (miRNA), a small noncoding RNA that is likely involved in post-transcriptional regulation of gene expression; miR-72 is expressed at high levels during all developmental stages and in glp-4 mutant hermaphrodites lacking a germline; miR-72 is also detected in him-8 mutants, starved L1 larvae, and dauer larvae; miR-72 is a member of the mir-31 miRNA family that includes human miR-31, C. elegans and C. briggase miR-73, and Drosophila melanogaster miR-31a and miR-31b; the targets of miR-72 are not yet known. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00004928 | |||||||||
| WBPaper00005825 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including daf-12; eat-2; and glp-4 based on tiling array and RNA-seq studies. Is affected by multi-walled carbon nanotube based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | F53G2.9 | |||||||
| F53G2.9a | |||||||||
| F53G2.9b | |||||||||
| Associated_feature | WBsf979101 | ||||||||
| WBsf986951 | |||||||||
| WBsf1011712 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00112523 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr2494 | ||||||||
| Expr8467 | |||||||||
| Expr10915 | |||||||||
| Drives_construct | WBCnstr00005493 | ||||||||
| WBCnstr00016883 | |||||||||
| Expression_cluster (36) | |||||||||
| Interaction | WBInteraction000544769 | ||||||||
| Map_info | Map | II | Position | -13.484 | Error | 0.155772 | |||
| Positive | Positive_clone | F53G2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
