WormBase Tree Display for Gene: WBGene00003308
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| WBGene00003308 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K01F9 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | mir-80 | Person_evidence | WBPerson18 | |||||
| Sequence_name | K01F9.3 | ||||||||
| Molecular_name | K01F9.3 | ||||||||
| K01F9.3a | |||||||||
| K01F9.3b | |||||||||
| Other_name | mir-227 | Person_evidence | WBPerson18 | ||||||
| cel-mir-80 | Remark | miRBase V21 import | |||||||
| Cel-Bantam-P2 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_K01F9.3 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | mir-80 | ||||||||
| DB_info | Database | miRBase | acc | MI0000051 | |||||
| SignaLink | mirna | cel-mir-80 | |||||||
| MirGeneDB | cel | Cel-Bantam-P2 | |||||||
| NDB | locus_tag | CELE_K01F9.3 | |||||||
| NCBI | gene | 3565575 | |||||||
| RefSeq | protein | NR_002370.2 | |||||||
| RNAcentral | URSid | URS00000625AC | |||||||
| URS00005C06A7 | |||||||||
| URS00005C93DF | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 06 Jun 2007 09:09:48 | WBPerson2970 | Event | Acquires_merge | WBGene00003320 | ||||
| Name_change | Other_name | mir-227 | |||||||
| Acquires_merge | WBGene00003320 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele (12) | |||||||||
| Strain | WBStrain00027443 | ||||||||
| WBStrain00007203 | |||||||||
| WBStrain00007204 | |||||||||
| WBStrain00007206 | |||||||||
| In_cluster | BANTAM | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00106254 | ||||||||
| Structured_description | Concise_description | mir-80 encodes a microRNA, a small non-protein coding RNA and is conserved in C. briggsae; based on RNA sequence the mir-80 family also includes C. elegans miR-81 and miR-82 and human miR-143; mir-80 is strongly expressed at all developmental stages in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-80 is unknown. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00004928 | |||||||||
| WBPaper00005825 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 08 Feb 2005 00:00:00 | ||||||||
| Automated_description | Involved in regulation of gene expression. Expressed in excretory cell; hypodermis; pharynx; somatic nervous system; and tail neurons. Used to study Parkinson's disease. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:14330 | Homo sapiens | Paper_evidence | WBPaper00035654 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 06 Jan 2014 00:00:00 | ||||||||
| Disease_relevance | mir-80 is a small non-protein coding RNA; microRNA expression profiling studies in an elegans transgenic model of Parkinson''s disease, where A53T alpha-synuclein is overexpressed, indicate that elegans mir-80 is differentially expressed. | Homo sapiens | Paper_evidence | WBPaper00035654 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 06 Jan 2014 00:00:00 | ||||||||
| Models_disease_in_annotation | WBDOannot00000266 | ||||||||
| Molecular_info | Corresponding_transcript | K01F9.3 | |||||||
| K01F9.3a | |||||||||
| K01F9.3b | |||||||||
| Other_sequence | AJ487603 | ||||||||
| Associated_feature | WBsf979111 | ||||||||
| WBsf993492 | |||||||||
| WBsf1015500 | |||||||||
| Gene_product_binds | WBsf977969 | ||||||||
| WBsf977970 | |||||||||
| WBsf977971 | |||||||||
| WBsf977972 | |||||||||
| Experimental_info | Expr_pattern | Expr1671 | |||||||
| Expr2498 | |||||||||
| Expr8413 | |||||||||
| Expr10928 | |||||||||
| Expr11257 | |||||||||
| Drives_construct | WBCnstr00005494 | ||||||||
| WBCnstr00005535 | |||||||||
| WBCnstr00018399 | |||||||||
| Expression_cluster (34) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Positive | Inside_rearr | nDf53 | ||||||
| Positive_clone | K01F9 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Pos_neg_data | 10923 | |||||||
| Interpolated_map_position | III | -0.0387588 | |||||||
| Reference (20) | |||||||||
| Remark | This mir gene has a paired gene (mir-227) encoded on the either side of the stemloop structure. I.e. both genes undergo base pairing with each other in the formation of the stem-loop. [040701 krb] | ||||||||
| Method | Gene |
