WormBase Tree Display for Gene: WBGene00003334
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| WBGene00003334 | Evidence | Paper_evidence | WBPaper00005825 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C39D10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-240 | Person_evidence | WBPerson18 | |||||
| Sequence_name | C39D10.10 | ||||||||
| Molecular_name | C39D10.10 | ||||||||
| C39D10.10a | |||||||||
| C39D10.10b | |||||||||
| Other_name | cel-mir-240 | Remark | miRBase V21 import | ||||||
| Cel-Mir-193-P1-v1 | Remark | MirGeneDB 2.1 import | |||||||
| Cel-Mir-193-P1-v2 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_C39D10.10 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-240 | ||||||||
| DB_info | Database | miRBase | acc | MI0000316 | |||||
| SignaLink | mirna | cel-mir-240 | |||||||
| MirGeneDB | cel | Cel-Mir-193-P1-v1 | |||||||
| Cel-Mir-193-P1-v2 | |||||||||
| NDB | locus_tag | CELE_C39D10.10 | |||||||
| NCBI | gene | 3565499 | |||||||
| RefSeq | protein | NR_002418.2 | |||||||
| RNAcentral | URSid | URS00000B9C03 | |||||||
| URS0000316018 | |||||||||
| URS00003F22F5 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar00090860 | ||||||||
| WBVar01499933 | |||||||||
| WBVar01499934 | |||||||||
| WBVar01499781 | |||||||||
| WBVar01163856 | |||||||||
| WBVar01499642 | |||||||||
| WBVar01500012 | |||||||||
| WBVar01500013 | |||||||||
| WBVar01498960 | |||||||||
| WBVar01500067 | |||||||||
| Strain | WBStrain00027532 | ||||||||
| WBStrain00027588 | |||||||||
| In_cluster | MIR-193 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-240 encodes a microRNA, a small non-protein coding RNA and appears to have a potential ortholog in C. briggsae; based on RNA sequence indentity, miR-240 is included in the miR-193 family of microRNAs along with human miR-193; miR-240 is weakly expressed in the L4 larval stage and in adults in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-240 is unknown. | Paper_evidence | WBPaper00005825 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 08 Feb 2005 00:00:00 | ||||||||
| Automated_description | Expressed in intestinal cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | C39D10.10 | |||||||
| C39D10.10a | |||||||||
| C39D10.10b | |||||||||
| Associated_feature | WBsf979147 | ||||||||
| Experimental_info | Expr_pattern | Expr2528 | |||||||
| Expr8399 | |||||||||
| Expr8423 | |||||||||
| Expr10593 | |||||||||
| Expr10889 | |||||||||
| Drives_construct | WBCnstr00005499 | ||||||||
| WBCnstr00017020 | |||||||||
| Expression_cluster (27) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | X | Position | -1.03851 | Error | 0.007994 | |||
| Positive | Positive_clone | C39D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005825 | ||||||||
| WBPaper00031335 | |||||||||
| WBPaper00032329 | |||||||||
| WBPaper00035168 | |||||||||
| WBPaper00039541 | |||||||||
| WBPaper00041724 | |||||||||
| WBPaper00043989 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
