WormBase Tree Display for Gene: WBGene00003356
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| WBGene00003356 | Evidence | Paper_evidence | WBPaper00005879 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK384 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-262 | Person_evidence | WBPerson18 | |||||
| Sequence_name | ZK384.5 | ||||||||
| Molecular_name | ZK384.5 | ||||||||
| ZK384.5b | |||||||||
| Other_name | cel-mir-262 | Remark | miRBase V21 import | ||||||
| CELE_ZK384.5 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | mir-262 | ||||||||
| DB_info | Database | miRBase | acc | MI0000339 | |||||
| NDB | locus_tag | CELE_ZK384.5 | |||||||
| NCBI | gene | 3565942 | |||||||
| RefSeq | protein | NR_002409.2 | |||||||
| RNAcentral | URSid | URS00003FE8C5 | |||||||
| URS0000565E90 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele (20) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-262 encodes a microRNA, a small non-protein coding RNA; mir-262 exhibits embryonic and post-embryonic expression; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-262 is unknown. | Paper_evidence | WBPaper00005879 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 28 Feb 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including tph-1; glp-4; and cat-2 based on RNA-seq studies. Is affected by nicotine and multi-walled carbon nanotube based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | ZK384.5 | |||||||
| ZK384.5b | |||||||||
| Associated_feature | WBsf979130 | ||||||||
| WBsf1003002 | |||||||||
| WBsf1021542 | |||||||||
| Experimental_info | Expr_pattern | Expr10969 | |||||||
| Expression_cluster (23) | |||||||||
| Map_info | Map | V | Position | 17.5753 | Error | 0.015619 | |||
| Positive | Positive_clone | ZK384 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5275 | |||||||
| 5282 | |||||||||
| 5385 | |||||||||
| 5636 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005879 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| The annotation of cel-mir-262 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21. | |||||||||
| Method | Gene |
