WormBase Tree Display for Gene: WBGene00003477
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| WBGene00003477 | Evidence | Paper_evidence | WBPaper00006051 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Person_evidence | WBPerson170 | ||||||||
| SMap | S_parent | Sequence | H28G03 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mtm-5 | Person_evidence | WBPerson170 | |||||
| Sequence_name | H28G03.6 | ||||||||
| Molecular_name | H28G03.6 | ||||||||
| H28G03.6.1 | |||||||||
| CE35733 | |||||||||
| Other_name | tag-87 | CGC_data_submission | |||||||
| CELE_H28G03.6 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mtm-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mtm | ||||||||
| Allele (195) | |||||||||
| Strain | WBStrain00001868 | ||||||||
| WBStrain00035627 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00097168 | ||||||||
| 00097169 | |||||||||
| 00097170 | |||||||||
| 00097171 | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00000086 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00003475 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003476 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003479 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021683 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003478 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | mtm-5 encodes a catalytically inactive myotubularin lipid phosphatase; MTM-5 is a large (1,744-residue) putative SET-binding factor orthologous to human SBF1 (OMIM:603560) and SBF2 (OMIM:607697, mutated in Charcot-Marie-Tooth disease, type 4B2); MTM-5 is expressed in adult pharynx, intestine, and body wall muscle. | Paper_evidence | WBPaper00006051 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00031006 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 23 Nov 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in cytoplasm and membrane. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4B2 and Charcot-Marie-Tooth disease type 4B3. Is an ortholog of human SBF1 (SET binding factor 1) and SBF2 (SET binding factor 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110190 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2135) | ||||
| DOID:0110194 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10542) | ||||||
| Molecular_info | Corresponding_CDS | H28G03.6 | |||||||
| Corresponding_CDS_history | H28G03.6:wp108 | ||||||||
| Corresponding_transcript | H28G03.6.1 | ||||||||
| Other_sequence | JI466809.1 | ||||||||
| JI164171.1 | |||||||||
| Dviv_isotig31818 | |||||||||
| AE04303 | |||||||||
| AYC04586_1 | |||||||||
| Associated_feature | WBsf653967 | ||||||||
| WBsf670515 | |||||||||
| WBsf670516 | |||||||||
| WBsf1005212 | |||||||||
| WBsf237361 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00049516 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00065079 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065080 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098946 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016333 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033764 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram320 | ||||||||
| Expr6286 | |||||||||
| Expr1028137 | |||||||||
| Expr1031593 | |||||||||
| Expr1153236 | |||||||||
| Expr2013811 | |||||||||
| Expr2032051 | |||||||||
| Drives_construct | WBCnstr00002661 | ||||||||
| WBCnstr00036090 | |||||||||
| Construct_product | WBCnstr00036090 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction | WBInteraction000111426 | ||||||||
| WBInteraction000166896 | |||||||||
| WBInteraction000296097 | |||||||||
| Map_info | Map | X | Position | -5.96165 | Error | 0.043208 | |||
| Positive | Positive_clone | H28G03 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4422 | |||||||
| 4502 | |||||||||
| 4767 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006051 | ||||||||
| WBPaper00033378 | |||||||||
| WBPaper00035284 | |||||||||
| WBPaper00037794 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063976 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
