WormBase Tree Display for Gene: WBGene00003524
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| WBGene00003524 | Evidence | Author_evidence | Moehrlen F | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T23H4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nas-5 | Person_evidence | WBPerson1103 | |||||
| Sequence_name | T23H4.3 | ||||||||
| Molecular_name | T23H4.3 | ||||||||
| T23H4.3.1 | |||||||||
| CE25126 | |||||||||
| Other_name | CELE_T23H4.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | nas-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nas | ||||||||
| Allele (33) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (25) | |||||||||
| Paralog (48) | |||||||||
| Structured_description | Concise_description | nas-5 encodes an astacin-like metalloprotease; loss of nas-5 activity in an RNAi hypersensitive strain results in axon guidance defects, including a failure of DD/VD motoneuron commissures to reach the dorsal cord, defasciculation of the dorsal nerve cord, and midline crossing defects in the ventral nerve cord. | Paper_evidence | WBPaper00006254 | |||||
| WBPaper00028984 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 15 Feb 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable metalloendopeptidase activity. Involved in pharyngeal pumping and pharynx development. Predicted to be located in extracellular region. Expressed in marginal cell; pharyngeal gland cell; rectal gland cell; and uterine seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T23H4.3 | |||||||
| Corresponding_transcript | T23H4.3.1 | ||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf717554 | ||||||||
| WBsf218370 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00066034 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00089167 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035898 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053993 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004298 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8908 | ||||||||
| Expr1025957 | |||||||||
| Expr1157538 | |||||||||
| Expr2013888 | |||||||||
| Expr2032128 | |||||||||
| Drives_construct | WBCnstr00013602 | ||||||||
| WBCnstr00036071 | |||||||||
| Construct_product | WBCnstr00013602 | ||||||||
| WBCnstr00036071 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (143) | |||||||||
| Interaction | WBInteraction000429464 | ||||||||
| Map_info | Map | I | Position | 3.97993 | Error | 0.001314 | |||
| Positive | Positive_clone | T23H4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006254 | ||||||||
| WBPaper00025850 | |||||||||
| WBPaper00028984 | |||||||||
| WBPaper00032165 | |||||||||
| WBPaper00035910 | |||||||||
| WBPaper00038491 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
