WormBase Tree Display for Gene: WBGene00003568
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| WBGene00003568 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ncx-3 | |||||||
| Sequence_name | ZC168.1 | ||||||||
| Molecular_name | ZC168.1 | ||||||||
| ZC168.1.1 | |||||||||
| CE46913 | |||||||||
| Other_name | CELE_ZC168.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ncx-3 | ||||||||
| DB_info | Database | AceView | gene | 4L485 | |||||
| WormQTL | gene | WBGene00003568 | |||||||
| WormFlux | gene | WBGene00003568 | |||||||
| NDB | locus_tag | CELE_ZC168.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003568|UniProtKB=G5ECW0 | |||||||
| family | PTHR11878 | ||||||||
| NCBI | gene | 177963 | |||||||
| RefSeq | protein | NM_069583.4 | |||||||
| TREEFAM | TREEFAM_ID | TF314308 | |||||||
| TrEMBL | UniProtAcc | G5ECW0 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECW0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ncx | ||||||||
| Allele (60) | |||||||||
| Legacy_information | [Kraev A] ncx for Na/Ca eXchanger. No mutants known. See ncx-1. Predicted gene ZC168.1 (incomplete) | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00003566 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003567 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ncx-3 encodes a putative 3Na[+]/1Ca[2+] exchanger, orthologous to human SLC8A1-3 and paralogous to NCX-1/-2; NCX-3 is predicted to export free cytoplasmic Ca[2+] with low affinity but high capacity, being complemented by low-capacity/high-affinity Ca[2+] ATPase pumps such as MCA-1/-3; NCX-3 has tandem Calx-alpha and Calx-beta domains predicted to carry out ion transport and regulation; NCX-3 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00012774 | |||||
| WBPaper00028596 | |||||||||
| WBPaper00031156 | |||||||||
| WBPaper00031157 | |||||||||
| WBPaper00031158 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 07 Nov 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium:sodium antiporter activity; calmodulin binding activity; and metal ion binding activity. Predicted to be involved in metal ion transport. Predicted to be located in membrane. Expressed in dorsal nerve cord; head neurons; phasmid neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC168.1 | |||||||
| Corresponding_CDS_history | ZC168.1:wp229 | ||||||||
| Corresponding_transcript | ZC168.1.1 | ||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf660618 | ||||||||
| WBsf660619 | |||||||||
| WBsf660620 | |||||||||
| WBsf997682 | |||||||||
| WBsf997683 | |||||||||
| WBsf1018130 | |||||||||
| WBsf229026 | |||||||||
| WBsf229027 | |||||||||
| WBsf229028 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037961 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022652 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058755 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11157 | ||||||||
| Expr1025717 | |||||||||
| Expr1031626 | |||||||||
| Expr1162174 | |||||||||
| Expr2013920 | |||||||||
| Expr2032160 | |||||||||
| Drives_construct | WBCnstr00018017 | ||||||||
| WBCnstr00036037 | |||||||||
| Construct_product | WBCnstr00036037 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (142) | |||||||||
| Interaction | WBInteraction000249973 | ||||||||
| WBInteraction000377559 | |||||||||
| WBInteraction000410210 | |||||||||
| WBInteraction000435230 | |||||||||
| WBInteraction000543493 | |||||||||
| WBInteraction000552801 | |||||||||
| Map_info | Map | IV | Position | 4.67188 | Error | 0.001956 | |||
| Positive | Positive_clone | ZC168 | Author_evidence | Kraev A | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00011772 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062223 | |||||||||
| WBPaper00065026 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
