WormBase Tree Display for Gene: WBGene00003604
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| WBGene00003604 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y73F8A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-5 | Person_evidence | WBPerson600 | |||||
| Sequence_name | Y73F8A.21 | ||||||||
| Molecular_name | Y73F8A.21a | ||||||||
| Y73F8A.21a.1 | |||||||||
| CE46694 | |||||||||
| Y73F8A.21c | |||||||||
| CE49996 | |||||||||
| Y73F8A.21b | |||||||||
| Y73F8A.21c.1 | |||||||||
| Other_name | CELE_Y73F8A.21 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (131) | |||||||||
| Legacy_information | NMK. Nuclear hormone receptor superfamily. [AE] | ||||||||
| [C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y73F8. [AE] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (32) | |||||||||
| Paralog (15) | |||||||||
| Structured_description | Concise_description | nhr-5 encodes one of over 200 C. elegans nuclear receptors; nhr-5 appears to belong to a class of nematode-specific nuclear receptors; a deletion allele of nhr-5, tm1864, is reportedly viable. | Paper_evidence | WBPaper00003416 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Aug 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y73F8A.21a | |||||||
| Y73F8A.21c | |||||||||
| Corresponding_CDS_history | Y73F8A.21:wp229 | ||||||||
| Y73F8A.21c:wp244 | |||||||||
| Corresponding_transcript | Y73F8A.21b | ||||||||
| Y73F8A.21a.1 | |||||||||
| Y73F8A.21c.1 | |||||||||
| Other_sequence (16) | |||||||||
| Associated_feature | WBsf716801 | ||||||||
| WBsf978675 | |||||||||
| WBsf998716 | |||||||||
| WBsf998717 | |||||||||
| WBsf998718 | |||||||||
| WBsf998719 | |||||||||
| WBsf998720 | |||||||||
| WBsf1018755 | |||||||||
| WBsf1018756 | |||||||||
| WBsf1018757 | |||||||||
| Transcription_factor | WBTranscriptionFactor000515 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00058388 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1011120 | ||||||||
| Expr1031653 | |||||||||
| Expr1161808 | |||||||||
| Expr2014210 | |||||||||
| Expr2032451 | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction (65) | |||||||||
| Map_info | Map | IV | Position | 13.9297 | Error | 0.017702 | |||
| Positive | Positive_clone | Y73F8 | Person_evidence | WBPerson600 | |||||
| Y73F8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | Multi_point | 5110 | |||||||
| 5290 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003416 | ||||||||
| WBPaper00027309 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
