WormBase Tree Display for Gene: WBGene00003610
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| WBGene00003610 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZC410 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-11 | Person_evidence | WBPerson600 | |||||
| Sequence_name | ZC410.1 | ||||||||
| Molecular_name (13) | |||||||||
| Other_name | CELE_ZC410.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-11 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (56) | |||||||||
| Legacy_information | NMK. Nuclear hormone receptor superfamily. [AE] | ||||||||
| [C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y54B5. [AE] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00023685 | ||||||||
| 00023686 | |||||||||
| 00023687 | |||||||||
| 00023688 | |||||||||
| 00077962 | |||||||||
| 00111242 | |||||||||
| 00111243 | |||||||||
| 00111244 | |||||||||
| 00111245 | |||||||||
| Ortholog (29) | |||||||||
| Paralog (225) | |||||||||
| Structured_description | Concise_description | nhr-11 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. | Paper_evidence | WBPaper00003416 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 16 Nov 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC410.1a | |||||||
| ZC410.1b | |||||||||
| ZC410.1d | |||||||||
| ZC410.1e | |||||||||
| Corresponding_CDS_history | ZC410.1:wp42 | ||||||||
| ZC410.1b:wp230 | |||||||||
| Corresponding_transcript | ZC410.1c | ||||||||
| ZC410.1a.1 | |||||||||
| ZC410.1b.1 | |||||||||
| ZC410.1d.1 | |||||||||
| ZC410.1e.1 | |||||||||
| Other_sequence | Acan_isotig11641 | ||||||||
| ACC32206_1 | |||||||||
| EX562395.1 | |||||||||
| EX560776.1 | |||||||||
| Associated_feature (14) | |||||||||
| Gene_product_binds (2827) | |||||||||
| Transcription_factor | WBTranscriptionFactor000537 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00038042 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00058892 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021681 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025085 | ||||||||
| Expr1031657 | |||||||||
| Expr1162328 | |||||||||
| Expr1200090 | |||||||||
| Expr2014018 | |||||||||
| Expr2032258 | |||||||||
| Drives_construct | WBCnstr00036003 | ||||||||
| Construct_product | WBCnstr00016733 | ||||||||
| WBCnstr00036003 | |||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (175) | |||||||||
| Interaction | WBInteraction000328037 | ||||||||
| WBInteraction000526953 | |||||||||
| WBInteraction000531872 | |||||||||
| WBInteraction000539480 | |||||||||
| Map_info | Map | IV | Position | 4.02093 | Error | 0.001453 | |||
| Positive | Positive_clone | Y54B5 | Person_evidence | WBPerson600 | |||||
| ZC410 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | Multi_point | 5048 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00062515 | |||||||||
| Remark | cm7a11 removed now that ZC410.1 canonical sequence added. sdm 11/00 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
