WormBase Tree Display for Gene: WBGene00003617
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| WBGene00003617 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F44C8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-18 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F44C8.3 | ||||||||
| Molecular_name | F44C8.3 | ||||||||
| F44C8.3.1 | |||||||||
| CE30796 | |||||||||
| Other_name | CELE_F44C8.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-18 | ||||||||
| DB_info | Database | AceView | gene | 5C707 | |||||
| WormQTL | gene | WBGene00003617 | |||||||
| WormFlux | gene | WBGene00003617 | |||||||
| NDB | locus_tag | CELE_F44C8.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003617|UniProtKB=O16360 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 178702 | |||||||
| RefSeq | protein | NM_071207.7 | |||||||
| SwissProt | UniProtAcc | O16360 | |||||||
| TREEFAM | TREEFAM_ID | TF315604 | |||||||
| UniProt_GCRP | UniProtAcc | O16360 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (34) | |||||||||
| Legacy_information | [C.elegansII] NMK. Nuclear hormone receptor superfamily. Cosmid W02G2. [AE] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00027918 | ||||||||
| 00027919 | |||||||||
| 00027920 | |||||||||
| 00027921 | |||||||||
| 00111270 | |||||||||
| 00111271 | |||||||||
| 00111272 | |||||||||
| 00111273 | |||||||||
| Contained_in_operon | CEOP5028 | ||||||||
| Ortholog (39) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Concise_description | The nhr-18 gene encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain; the human homolog of nhr-18, CYP21, when mutated leads to congenital adrenal hyperplasia (OMIM:201910). | Paper_evidence | WBPaper00003416 | |||||
| WBPaper00004103 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 16 Nov 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in anal depressor muscle; intestinal muscle; and vulval muscle. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F44C8.3 | |||||||
| Corresponding_transcript | F44C8.3.1 | ||||||||
| Associated_feature | WBsf978807 | ||||||||
| Transcription_factor | WBTranscriptionFactor000716 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00047267 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047266 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014917 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076425 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032227 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7559 | ||||||||
| Expr1023222 | |||||||||
| Expr1031663 | |||||||||
| Expr1151121 | |||||||||
| Expr2014092 | |||||||||
| Expr2032331 | |||||||||
| Drives_construct | WBCnstr00012704 | ||||||||
| WBCnstr00035997 | |||||||||
| Construct_product | WBCnstr00035997 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (160) | |||||||||
| SAGE_tag | SAGE:tatgaatatg | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:gagatgcactggatgct | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gatactagaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:cgatgtgtcgaatcgaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ttgcagaagc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gagatgcact | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ctcctacatc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ttgtcgagcg | Strand | Antisense | |||||||
| SAGE:caccattaccgaccatc | Strand | Antisense | |||||||
| SAGE:taatcgtttt | Strand | Antisense | |||||||
| Interaction (18) | |||||||||
| Map_info | Map | V | Position | -15.2486 | Error | 0.008397 | |||
| Positive | Positive_clone | C07D3 | Person_evidence | WBPerson600 | |||||
| Author_evidence | Maina CV | ||||||||
| F44C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| W02G2 | Person_evidence | WBPerson600 | |||||||
| Author_evidence | Maina CV | ||||||||
| Y5H2 | Person_evidence | WBPerson600 | |||||||
| Y54G1 | Person_evidence | WBPerson600 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012651 | ||||||||
| WBPaper00027309 | |||||||||
| Remark | Map V Position -14.540000 | ||||||||
| F44C8.3 link removed by agreement. [sdm 0107] | |||||||||
| F44C8.3 link reinstated, krb [020528] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
