WormBase Tree Display for Gene: WBGene00003636
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| WBGene00003636 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C45E5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-46 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C45E5.6 | ||||||||
| Molecular_name | C45E5.6a | ||||||||
| C45E5.6a.1 | |||||||||
| CE08734 | |||||||||
| C45E5.6b | |||||||||
| CE29226 | |||||||||
| C45E5.6c | |||||||||
| CE29227 | |||||||||
| C45E5.6b.1 | |||||||||
| C45E5.6c.1 | |||||||||
| Other_name | CELE_C45E5.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-46 | ||||||||
| DB_info | Database | AceView | gene | 4G512 | |||||
| WormQTL | gene | WBGene00003636 | |||||||
| WormFlux | gene | WBGene00003636 | |||||||
| NDB | locus_tag | CELE_C45E5.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003636|UniProtKB=Q95QR2 | |||||||
| family | PTHR47630 | ||||||||
| NCBI | gene | 177350 | |||||||
| RefSeq | protein | NM_001380240.1 | |||||||
| NM_068457.6 | |||||||||
| NM_001027894.8 | |||||||||
| TREEFAM | TREEFAM_ID | TF315528 | |||||||
| TrEMBL | UniProtAcc | Q95QR2 | |||||||
| Q95QR3 | |||||||||
| H2KZB8 | |||||||||
| UniProt_GCRP | UniProtAcc | Q95QR2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (112) | |||||||||
| Strain | WBStrain00036574 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022194 | ||||||||
| 00022195 | |||||||||
| 00022196 | |||||||||
| 00022197 | |||||||||
| 00111350 | |||||||||
| 00111351 | |||||||||
| 00111352 | |||||||||
| 00111353 | |||||||||
| Ortholog (36) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in several structures, including hypodermis; intestine; muscle cell; neurons; and spermatheca. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C45E5.6a | |||||||
| C45E5.6b | |||||||||
| C45E5.6c | |||||||||
| Corresponding_CDS_history | C45E5.6d:wp275 | ||||||||
| Corresponding_transcript | C45E5.6a.1 | ||||||||
| C45E5.6b.1 | |||||||||
| C45E5.6c.1 | |||||||||
| Other_sequence (20) | |||||||||
| Associated_feature (20) | |||||||||
| Transcription_factor | WBTranscriptionFactor000370 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00115810 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029833 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042531 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011981 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9816 | ||||||||
| Expr9835 | |||||||||
| Expr1018751 | |||||||||
| Expr1031680 | |||||||||
| Expr1146518 | |||||||||
| Expr2014195 | |||||||||
| Expr2032436 | |||||||||
| Drives_construct | WBCnstr00014336 | ||||||||
| WBCnstr00014355 | |||||||||
| WBCnstr00035980 | |||||||||
| Construct_product | WBCnstr00035980 | ||||||||
| Microarray_results (43) | |||||||||
| Expression_cluster (127) | |||||||||
| Interaction (51) | |||||||||
| Map_info | Map | IV | Position | 2.26421 | Error | 0.004295 | |||
| Positive | Positive_clone | C45E5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005859 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00054872 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
