WormBase Tree Display for Gene: WBGene00003637
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| WBGene00003637 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C24G6 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-47 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C24G6.4 | ||||||||
| Molecular_name | C24G6.4 | ||||||||
| C24G6.4.1 | |||||||||
| CE27727 | |||||||||
| Other_name | csr-1 | Accession_evidence | EMBL | U41296 | |||||
| nhr-279 | Person_evidence | WBPerson600 | |||||||
| CELE_C24G6.4 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | nhr-47 | ||||||||
| DB_info | Database | AceView | gene | 5F989 | |||||
| WormQTL | gene | WBGene00003637 | |||||||
| WormFlux | gene | WBGene00003637 | |||||||
| NDB | locus_tag | CELE_C24G6.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003637|UniProtKB=Q17370 | |||||||
| family | PTHR24083 | ||||||||
| NCBI | gene | 178933 | |||||||
| RefSeq | protein | NM_072054.6 | |||||||
| SwissProt | UniProtAcc | Q17370 | |||||||
| TREEFAM | TREEFAM_ID | TF316650 | |||||||
| UniProt_GCRP | UniProtAcc | Q17370 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 15 Dec 2005 14:14:59 | WBPerson1849 | Event | Acquires_merge | WBGene00020253 | ||||
| Name_change | Other_name | nhr-279 | |||||||
| Acquires_merge | WBGene00020253 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (78) | |||||||||
| Strain | WBStrain00035322 | ||||||||
| WBStrain00035323 | |||||||||
| WBStrain00035324 | |||||||||
| WBStrain00036535 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP5533 | ||||||||
| Ortholog (30) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Concise_description | nhr-47 is predicted to encode a nuclear hormone receptor (NHR); gene expression of nhr-47 appears to be induced upon exposure of worm cultures to estradiol. | Paper_evidence | WBPaper00003416 | |||||
| WBPaper00026592 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 14 Jul 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in head neurons; spermatheca; tail neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C24G6.4 | |||||||
| Corresponding_transcript | C24G6.4.1 | ||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf646808 | ||||||||
| WBsf661263 | |||||||||
| WBsf661264 | |||||||||
| WBsf978616 | |||||||||
| WBsf981935 | |||||||||
| WBsf1000022 | |||||||||
| WBsf1019652 | |||||||||
| WBsf231764 | |||||||||
| WBsf231765 | |||||||||
| Transcription_factor | WBTranscriptionFactor000295 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00041101 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041100 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027656 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011118 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram136 | ||||||||
| Chronogram150 | |||||||||
| Chronogram151 | |||||||||
| Expr5329 | |||||||||
| Expr7443 | |||||||||
| Expr1019888 | |||||||||
| Expr1031681 | |||||||||
| Expr1145137 | |||||||||
| Expr2014196 | |||||||||
| Expr2032437 | |||||||||
| Drives_construct | WBCnstr00001132 | ||||||||
| WBCnstr00001133 | |||||||||
| WBCnstr00001134 | |||||||||
| WBCnstr00003875 | |||||||||
| WBCnstr00012587 | |||||||||
| WBCnstr00035979 | |||||||||
| Construct_product | WBCnstr00016572 | ||||||||
| WBCnstr00035979 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (136) | |||||||||
| Interaction (53) | |||||||||
| Map_info | Map | V | Position | -1.75837 | Error | 0.009267 | |||
| Positive | Positive_clone | C24G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| T05C3 | |||||||||
| Mapping_data | Multi_point | 4348 | |||||||
| 4717 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (30) | |||||||||
| Remark | Ann Sluder is equating this with C24G6.4, which is temporarily called Csr-1. [sdm 141100] | ||||||||
| email 129 from Ann Sluder confirms this is C24G6.4. T05C3.1 is probably a pseudogene and is losing its link to nhr-47. | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
