WormBase Tree Display for Gene: WBGene00003689
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| WBGene00003689 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-99 | Person_evidence | WBPerson600 | |||||
| Sequence_name | M02H5.1 | ||||||||
| Molecular_name | M02H5.1 | ||||||||
| M02H5.1.1 | |||||||||
| CE25947 | |||||||||
| Other_name | M02H5.h | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_M02H5.1 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | nhr-99 | ||||||||
| DB_info | Database | AceView | gene | 5A955 | |||||
| WormQTL | gene | WBGene00003689 | |||||||
| WormFlux | gene | WBGene00003689 | |||||||
| NDB | locus_tag | CELE_M02H5.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003689|UniProtKB=Q966H4 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 178569 | |||||||
| RefSeq | protein | NM_070813.3 | |||||||
| TrEMBL | UniProtAcc | Q966H4 | |||||||
| UniProt_GCRP | UniProtAcc | Q966H4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (170) | |||||||||
| Strain | WBStrain00036749 | ||||||||
| WBStrain00036770 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00090951 | ||||||||
| 00090952 | |||||||||
| 00090953 | |||||||||
| 00090954 | |||||||||
| 00111553 | |||||||||
| 00111554 | |||||||||
| 00111555 | |||||||||
| 00111556 | |||||||||
| Ortholog (61) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Concise_description | nhr-99 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. | Paper_evidence | WBPaper00003416 | |||||
| Person_evidence | WBPerson600 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 21 Nov 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M02H5.1 | |||||||
| Corresponding_transcript | M02H5.1.1 | ||||||||
| Associated_feature | WBsf646633 | ||||||||
| WBsf978386 | |||||||||
| WBsf231335 | |||||||||
| Transcription_factor | WBTranscriptionFactor000549 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00050831 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034392 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013293 | ||||||||
| Expr1154525 | |||||||||
| Expr2014251 | |||||||||
| Expr2032492 | |||||||||
| Drives_construct | WBCnstr00035944 | ||||||||
| Construct_product | WBCnstr00035944 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (181) | |||||||||
| Map_info | Map | V | Position | -19.9905 | |||||
| Positive | Positive_clone | M02H5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00058201 | |||||||||
| WBPaper00058292 | |||||||||
| WBPaper00060358 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
