WormBase Tree Display for Gene: WBGene00003695
expand all nodes | collapse all nodes | view schema
| WBGene00003695 | SMap | S_parent | Sequence | C06G3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-105 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C06G3.1 | ||||||||
| Molecular_name | C06G3.1a | ||||||||
| C06G3.1a.1 | |||||||||
| CE34659 | |||||||||
| C06G3.1b | |||||||||
| CE37188 | |||||||||
| C06G3.1b.1 | |||||||||
| Other_name | CELE_C06G3.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-105 | ||||||||
| DB_info | Database | AceView | gene | 4H817 | |||||
| WormQTL | gene | WBGene00003695 | |||||||
| WormFlux | gene | WBGene00003695 | |||||||
| NDB | locus_tag | CELE_C06G3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003695|UniProtKB=Q86PJ4 | |||||||
| family | PTHR46587 | ||||||||
| NCBI | gene | 177476 | |||||||
| RefSeq | protein | NM_001026132.7 | |||||||
| NM_001026133.7 | |||||||||
| TREEFAM | TREEFAM_ID | TF321643 | |||||||
| TrEMBL | UniProtAcc | Q3LQX0 | |||||||
| Q86PJ4 | |||||||||
| UniProt_GCRP | UniProtAcc | Q86PJ4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (63) | |||||||||
| Strain | WBStrain00035677 | ||||||||
| WBStrain00030061 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00080553 | ||||||||
| 00080554 | |||||||||
| 00080555 | |||||||||
| 00080556 | |||||||||
| 00111577 | |||||||||
| 00111578 | |||||||||
| 00111579 | |||||||||
| 00111580 | |||||||||
| Ortholog (28) | |||||||||
| Paralog (216) | |||||||||
| Structured_description | Concise_description | nhr-105 encodes a nuclear receptor that is most highly conserved amongst nematode species; nhr-105 mRNA levels are upregulated in response to progesterone treatment. | Paper_evidence | WBPaper00026592 | |||||
| WBPaper00027309 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C06G3.1a | |||||||
| C06G3.1b | |||||||||
| Corresponding_CDS_history | C06G3.1:wp104 | ||||||||
| C06G3.1:wp129 | |||||||||
| Corresponding_transcript | C06G3.1a.1 | ||||||||
| C06G3.1b.1 | |||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf646060 | ||||||||
| WBsf978670 | |||||||||
| WBsf996873 | |||||||||
| WBsf996874 | |||||||||
| WBsf1017644 | |||||||||
| WBsf1017645 | |||||||||
| Transcription_factor | WBTranscriptionFactor000028 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00028591 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00112735 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010336 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112737 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112736 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039928 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7417 | ||||||||
| Expr1028788 | |||||||||
| Expr1031722 | |||||||||
| Expr1144005 | |||||||||
| Expr1200051 | |||||||||
| Expr2014002 | |||||||||
| Expr2032242 | |||||||||
| Drives_construct | WBCnstr00012560 | ||||||||
| WBCnstr00035938 | |||||||||
| Construct_product | WBCnstr00035938 | ||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (130) | |||||||||
| Interaction (117) | |||||||||
| Map_info | Map | IV | Position | 3.28142 | Error | 0.000541 | |||
| Positive | Positive_clone | C06G3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4528 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026592 | ||||||||
| WBPaper00027309 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
