WormBase Tree Display for Gene: WBGene00003702

WBGene00003702 SMap: S_parent: Sequence: Y70C5C
  Identity: Version: 1
    Name: CGC_name: nhr-112 Person_evidence: WBPerson600
      Sequence_name: Y70C5C.6
      Molecular_name: Y70C5C.6
        Y70C5C.6.1
        CE16678
      Other_name: CELE_Y70C5C.6 Accession_evidence: NDB BX284605
      Public_name: nhr-112
    DB_info: Database: AceView gene 5R202
        WormQTL gene WBGene00003702
        WormFlux gene WBGene00003702
        NDB locus_tag CELE_Y70C5C.6
        Panther gene CAEEL|WormBase=WBGene00003702|UniProtKB=O62496
          family PTHR46800
        NCBI gene 180115
        RefSeq protein NM_001029115.6
        TrEMBL UniProtAcc O62496
        UniProt_GCRP UniProtAcc O62496
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (53)
    Strain: WBStrain00002969
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog (54)
    Paralog (216)
    Structured_description: Concise_description: nhr-112 encodes a nuclear receptor that is most highly conserved amongst nematode species; loss of nhr-112 activity via RNAi results in increased susceptibility to Pseudomonas aeruginosa strain PA14. Paper_evidence: WBPaper00027309
            WBPaper00028482
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 May 2007 00:00:00
      Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in nucleus. Expressed in head and tail. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y70C5C.6
    Corresponding_CDS_history: Y70C5C.6b:wp262
    Corresponding_transcript: Y70C5C.6.1
    Associated_feature: WBsf235155
    Transcription_factor: WBTranscriptionFactor000420
  Experimental_info: RNAi_result: WBRNAi00065089 Inferred_automatically: RNAi_primary
      WBRNAi00021359 Inferred_automatically: RNAi_primary
      WBRNAi00085675 Inferred_automatically: RNAi_primary
      WBRNAi00007473 Inferred_automatically: RNAi_primary
      WBRNAi00058120 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7104
      Expr1013734
      Expr1161541
      Expr2014010
      Expr2032250
    Drives_construct: WBCnstr00003475
      WBCnstr00016287
      WBCnstr00035932
    Construct_product: WBCnstr00016287
      WBCnstr00016769
      WBCnstr00035932
    Microarray_results (25)
    Expression_cluster (193)
    Interaction: WBInteraction000453487
      WBInteraction000504165
      WBInteraction000530835
      WBInteraction000560756
  Map_info: Map: V Position: 11.0869 Error: 0.004861
    Positive: Positive_clone: Y70C5C Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5094
        4236
        4616
        5496
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00027557
    WBPaper00028482
    WBPaper00064105
    WBPaper00064415
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene