WormBase Tree Display for Gene: WBGene00003709

WBGene00003709 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 2
    Name: CGC_name: nhr-119 Person_evidence: WBPerson600
      Sequence_name: K12H6.1
      Molecular_name: K12H6.1
        K12H6.1.1
        CE44851
      Other_name: Y110A2B.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_K12H6.1 Accession_evidence: NDB BX284602
      Public_name: nhr-119
    DB_info: Database: AceView gene 2D86
        WormQTL gene WBGene00003709
        WormFlux gene WBGene00003709
        NDB locus_tag CELE_K12H6.1
        Panther gene CAEEL|WormBase=WBGene00003709|UniProtKB=G4SCE4
          family PTHR47519
        NCBI gene 187340
        RefSeq protein NM_061967.4
        TREEFAM TREEFAM_ID TF315278
        TrEMBL UniProtAcc G4SCE4
        UniProt_GCRP UniProtAcc G4SCE4
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 06 May 2010 10:03:44 WBPerson1867 Event: Acquires_merge: WBGene00017256
      Acquires_merge: WBGene00017256
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (256)
    RNASeq_FPKM (74)
    GO_annotation: 00009243
      00009244
      00009245
      00009246
      00111633
      00111634
      00111635
      00111636
    Ortholog (34)
    Paralog (15)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in hypodermis and intestine. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K12H6.1
    Corresponding_CDS_history: K12H6.1:wp214
    Corresponding_transcript: K12H6.1.1
    Other_sequence (25)
    Associated_feature: WBsf978719
      WBsf987062
      WBsf987063
      WBsf1011773
    Transcription_factor: WBTranscriptionFactor000332
  Experimental_info: RNAi_result: WBRNAi00043989 Inferred_automatically: RNAi_primary
      WBRNAi00012878 Inferred_automatically: RNAi_primary
      WBRNAi00017069 Inferred_automatically: RNAi_primary
      WBRNAi00030644 Inferred_automatically: RNAi_primary
      WBRNAi00019867 Inferred_automatically: RNAi_primary
      WBRNAi00050695 Inferred_automatically: RNAi_primary
      WBRNAi00081647 Inferred_automatically: RNAi_primary
      WBRNAi00012879 Inferred_automatically: RNAi_primary
      WBRNAi00034322 Inferred_automatically: RNAi_primary
      WBRNAi00050694 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7617
      Expr1014618
      Expr1031727
      Expr1154396
      Expr2014017
      Expr2032257
    Drives_construct: WBCnstr00012762
    Microarray_results (40)
    Expression_cluster (110)
    Interaction: WBInteraction000406890
      WBInteraction000533625
      WBInteraction000573483
      WBInteraction000574489
  Map_info: Map: II Position: -10.9161 Error: 0.16119
    Positive: Positive_clone: K12H6 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4329
        5434
    Pseudo_map_position
  Reference: WBPaper00026592
    WBPaper00027309
    WBPaper00055090
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene