WormBase Tree Display for Gene: WBGene00003713
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| WBGene00003713 | SMap | S_parent | Sequence | M02H5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-123 | Person_evidence | WBPerson600 | |||||
| Sequence_name | M02H5.7 | ||||||||
| Molecular_name | M02H5.7 | ||||||||
| M02H5.7.1 | |||||||||
| CE21074 | |||||||||
| Other_name | M02H5.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_M02H5.7 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | nhr-123 | ||||||||
| DB_info | Database | AceView | gene | 5A927 | |||||
| WormQTL | gene | WBGene00003713 | |||||||
| WormFlux | gene | WBGene00003713 | |||||||
| NDB | locus_tag | CELE_M02H5.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003713|UniProtKB=G5EDC3 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 187411 | |||||||
| RefSeq | protein | NM_070806.7 | |||||||
| TREEFAM | TREEFAM_ID | TF315604 | |||||||
| TrEMBL | UniProtAcc | G5EDC3 | |||||||
| UniProt_GCRP | UniProtAcc | G5EDC3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (120) | |||||||||
| Strain | WBStrain00036512 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00013690 | ||||||||
| 00013691 | |||||||||
| 00013692 | |||||||||
| 00013693 | |||||||||
| 00111649 | |||||||||
| 00111650 | |||||||||
| 00111651 | |||||||||
| 00111652 | |||||||||
| Ortholog (71) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in dorsal nerve cord; head neurons; intestine; pharynx; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M02H5.7 | |||||||
| Corresponding_transcript | M02H5.7.1 | ||||||||
| Associated_feature | WBsf661097 | ||||||||
| WBsf231330 | |||||||||
| Transcription_factor | WBTranscriptionFactor000487 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00017140 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050840 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103460 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034390 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7621 | ||||||||
| Expr1014306 | |||||||||
| Expr1031729 | |||||||||
| Expr1154534 | |||||||||
| Expr2014022 | |||||||||
| Expr2032262 | |||||||||
| Drives_construct | WBCnstr00012766 | ||||||||
| WBCnstr00035926 | |||||||||
| Construct_product | WBCnstr00035926 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (105) | |||||||||
| Map_info | Map | V | Position | -19.994 | |||||
| Positive | Positive_clone | M02H5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024494 | ||||||||
| WBPaper00027309 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
