WormBase Tree Display for Gene: WBGene00003748
expand all nodes | collapse all nodes | view schema
| WBGene00003748 | SMap | S_parent | Sequence | F37A8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | npl-10 | Person_evidence | WBPerson11490 | |||||
| Sequence_name | F37A8.4 | ||||||||
| Molecular_name | F37A8.4 | ||||||||
| F37A8.4.1 | |||||||||
| CE00989 | |||||||||
| Other_name | sifp-1 | Person_evidence | WBPerson11490 | ||||||
| CELE_F37A8.4 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | npl-10 | ||||||||
| DB_info | Database | AceView | gene | 3F24 | |||||
| WormQTL | gene | WBGene00003748 | |||||||
| WormFlux | gene | WBGene00003748 | |||||||
| NDB | locus_tag | CELE_F37A8.4 | |||||||
| NCBI | gene | 191733 | |||||||
| RefSeq | protein | NM_065394.7 | |||||||
| TREEFAM | TREEFAM_ID | TF318867 | |||||||
| TrEMBL | UniProtAcc | Q20114 | |||||||
| UniProt_GCRP | UniProtAcc | Q20114 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 13 Oct 2023 01:37:05 | WBPerson51134 | Name_change | CGC_name | npl-10 | ||||
| Other_name | sifp-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npl | ||||||||
| Allele (39) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00067174 | ||||||||
| Ortholog (20) | |||||||||
| Structured_description | Concise_description | nlp-10 encodes four predicted neuropeptide-like proteins; nlp-10 is part of a GGxY neuropeptide family that has members in several other nematode species; nlp-10 is expressed in a variety of neurons, including ASK, ADL, CAN, two lateral neurons, two anterior pharyngeal neurons, one tail neuron, and one male tail neuron; as loss of nlp-10 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-10-encoded peptides in development and/or behavior is not yet known. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00004975 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in neuropeptide signaling pathway. Expressed in lateral ganglion; neurons; and in male. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F37A8.4 | |||||||
| Corresponding_transcript | F37A8.4.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf226436 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00031900 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046573 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006741 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020 | ||||||||
| Expr1704 | |||||||||
| Expr1012216 | |||||||||
| Expr1150459 | |||||||||
| Expr2014274 | |||||||||
| Expr2032514 | |||||||||
| Drives_construct | WBCnstr00010030 | ||||||||
| WBCnstr00010397 | |||||||||
| WBCnstr00035896 | |||||||||
| Construct_product | WBCnstr00010030 | ||||||||
| WBCnstr00035896 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (217) | |||||||||
| Interaction (40) | |||||||||
| Map_info | Map | III | Position | -4.10081 | Error | 0.008923 | |||
| Positive | Positive_clone | F37A8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003915 | ||||||||
| WBPaper00004975 | |||||||||
| WBPaper00023475 | |||||||||
| WBPaper00026655 | |||||||||
| WBPaper00030763 | |||||||||
| WBPaper00031998 | |||||||||
| WBPaper00032053 | |||||||||
| WBPaper00049256 | |||||||||
| WBPaper00065565 | |||||||||
| WBPaper00065946 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
