WormBase Tree Display for Gene: WBGene00003826
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| WBGene00003826 | Evidence | Person_evidence | WBPerson2661 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_III | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ntl-3 | |||||||
| Sequence_name | Y56A3A.1 | ||||||||
| Molecular_name | Y56A3A.1a | ||||||||
| Y56A3A.1a.1 | |||||||||
| CE33892 | |||||||||
| Y56A3A.1b | |||||||||
| CE18516 | |||||||||
| Y56A3A.1b.1 | |||||||||
| Other_name | Y56A3A.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y56A3A.1 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | ntl-3 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00003826 | |||||
| WormFlux | gene | WBGene00003826 | |||||||
| NDB | locus_tag | CELE_Y56A3A.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003826|UniProtKB=G5EFX8 | |||||||
| family | PTHR23326 | ||||||||
| NCBI | gene | 176614 | |||||||
| RefSeq | protein | NM_001083184.5 | |||||||
| NM_001083183.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF321963 | |||||||
| TrEMBL | UniProtAcc | G5EFX8 | |||||||
| Q0PDJ7 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EFX8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ntl | ||||||||
| Allele (467) | |||||||||
| Strain | WBStrain00003397 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00003825 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006499 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ntl-3 is the ortholog of NOT3/NOT5, a member of a protein complex also predicted to contain ccf-1/Y56A3A.20 (CAF1/POP2); ntl-3 is required for embryonic viability in mass RNAi assays. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00018722 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to be located in P-body. Predicted to be part of CCR4-NOT core complex. Is an ortholog of human CNOT3 (CCR4-NOT transcription complex subunit 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y56A3A.1a | |||||||
| Y56A3A.1b | |||||||||
| Corresponding_CDS_history | Y56A3A.1:wp99 | ||||||||
| Corresponding_transcript | Y56A3A.1a.1 | ||||||||
| Y56A3A.1b.1 | |||||||||
| Other_sequence (53) | |||||||||
| Associated_feature (21) | |||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr7066 | ||||||||
| Expr1026670 | |||||||||
| Expr1031801 | |||||||||
| Expr1160996 | |||||||||
| Expr2014513 | |||||||||
| Expr2032752 | |||||||||
| Drives_construct | WBCnstr00003865 | ||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction (43) | |||||||||
| Map_info | Map | III | Position | 13.2685 | Error | 0.003425 | |||
| Positive | Positive_clone | Y56A3A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040600 | |||||||||
| WBPaper00043886 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
