WormBase Tree Display for Gene: WBGene00003849
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WBGene00003849 | SMap | S_parent | Sequence | T01C4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | odr-2 | Person_evidence | WBPerson42 | |||||
Sequence_name | T01C4.2 | ||||||||
Molecular_name | T01C4.2a | ||||||||
T01C4.2a.1 | |||||||||
CE28348 | |||||||||
T01C4.2b | |||||||||
CE28349 | |||||||||
T01C4.2c | |||||||||
CE28350 | |||||||||
T01C4.2b.1 | |||||||||
T01C4.2c.1 | |||||||||
Other_name | CELE_T01C4.2 | Accession_evidence | NDB | BX284605 | |||||
Public_name | odr-2 | ||||||||
DB_info | Database | AceView | gene | 5H593 | |||||
WormQTL | gene | WBGene00003849 | |||||||
WormFlux | gene | WBGene00003849 | |||||||
NDB | locus_tag | CELE_T01C4.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003849|UniProtKB=Q9BMI0 | |||||||
family | PTHR34722 | ||||||||
NCBI | gene | 179098 | |||||||
RefSeq | protein | NM_001028919.5 | |||||||
NM_001392541.1 | |||||||||
NM_001028918.4 | |||||||||
TREEFAM | TREEFAM_ID | TF315944 | |||||||
TrEMBL | UniProtAcc | G5EEC7 | |||||||
Q9BMI0 | |||||||||
Q9BMH9 | |||||||||
UniProt_GCRP | UniProtAcc | Q9BMI0 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | odr | ||||||||
Allele (147) | |||||||||
Legacy_information | [Bargmann CI] defective chemotaxis to volatile odorants | ||||||||
[C.elegansII] n1939 : defective chemotaxis to some volatile odorants. n1939/Df similar. OA2: n2148, n2145. Cloned: encodes predicted ~200 aa protein, GPI-linked. [Bargmann et al. 1993; CX] | |||||||||
Strain | WBStrain00005240 | ||||||||
WBStrain00005241 | |||||||||
WBStrain00027112 | |||||||||
WBStrain00040012 | |||||||||
WBStrain00040013 | |||||||||
WBStrain00040017 | |||||||||
WBStrain00005222 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (15) | |||||||||
Ortholog (26) | |||||||||
Paralog | WBGene00001986 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WBGene00001987 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00001988 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00001989 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00001990 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00044484 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00020489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
Structured_description | Concise_description | odr-2 encodes three isoforms of a predicted membrane-associated protein related to the Ly-6 (leukocyte antigen-6) family of GPI (glycosylated phosphatidylinositol)-linked signaling proteins; ODR-2 activity is required for proper functioning of the AWC olfactory neurons and thus for chemotaxis in response to AWC-sensed odorants; ODR-2 is expressed at high levels in sensory neurons, motor neurons, and interneurons, where it appears to be enriched in axons. | Paper_evidence | WBPaper00004498 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Involved in olfactory behavior and response to odorant. Located in axon; external side of plasma membrane; and neuronal cell body. Expressed in head neurons; sensory neurons; somatic nervous system; tail; and in male. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T01C4.2a | |||||||
T01C4.2b | |||||||||
T01C4.2c | |||||||||
Corresponding_transcript | T01C4.2a.1 | ||||||||
T01C4.2b.1 | |||||||||
T01C4.2c.1 | |||||||||
Other_sequence (15) | |||||||||
Associated_feature (16) | |||||||||
Experimental_info | RNAi_result | WBRNAi00017953 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00052103 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00035010 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00052104 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr810 | ||||||||
Expr811 | |||||||||
Expr4348 | |||||||||
Expr15398 | |||||||||
Expr1021703 | |||||||||
Expr1031816 | |||||||||
Expr1155735 | |||||||||
Expr2014608 | |||||||||
Expr2032841 | |||||||||
Drives_construct (17) | |||||||||
Construct_product | WBCnstr00011937 | ||||||||
WBCnstr00013112 | |||||||||
WBCnstr00035831 | |||||||||
Microarray_results (38) | |||||||||
Expression_cluster (200) | |||||||||
Interaction | WBInteraction000004087 | ||||||||
WBInteraction000028395 | |||||||||
WBInteraction000112014 | |||||||||
WBInteraction000166469 | |||||||||
WBInteraction000260587 | |||||||||
WBInteraction000501938 | |||||||||
WBInteraction000558278 | |||||||||
WBInteraction000558280 | |||||||||
WBInteraction000558281 | |||||||||
Map_info | Map | V | Position | 0.590561 | Error | 0.002974 | |||
Well_ordered | |||||||||
Positive | Positive_clone | T01C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
VC5 | |||||||||
Mapping_data | Multi_point | 2049 | |||||||
2050 | |||||||||
2051 | |||||||||
4303 | |||||||||
4911 | |||||||||
Pos_neg_data | 5974 | ||||||||
5978 | |||||||||
5981 | |||||||||
5975 | |||||||||
5977 | |||||||||
5980 | |||||||||
5982 | |||||||||
5973 | |||||||||
5976 | |||||||||
5979 | |||||||||
Reference (36) | |||||||||
Method | Gene |