WormBase Tree Display for Gene: WBGene00003975
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| WBGene00003975 | SMap | S_parent | Sequence | T28D6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pen-2 | Person_evidence | WBPerson339 | |||||
| Sequence_name | T28D6.9 | ||||||||
| Molecular_name | T28D6.9 | ||||||||
| T28D6.9.1 | |||||||||
| CE24023 | |||||||||
| Other_name | CELE_T28D6.9 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | pen-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pen | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00036912 | ||||||||
| WBStrain00036920 | |||||||||
| WBStrain00004790 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (31) | |||||||||
| Structured_description | Automated_description | Involved in several processes, including Notch signaling pathway; cell differentiation; and pharynx development. Located in membrane. Expressed in intestine; muscle cell; neurons; and vulva. Human ortholog(s) of this gene implicated in hidradenitis suppurativa. Is an ortholog of human PSENEN (presenilin enhancer, gamma-secretase subunit). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:2280 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30100) | ||||
| Molecular_info | Corresponding_CDS | T28D6.9 | |||||||
| Corresponding_transcript | T28D6.9.1 | ||||||||
| Other_sequence | CBC04942_1 | ||||||||
| Oden_isotig13830 | |||||||||
| Associated_feature | WBsf645611 | ||||||||
| WBsf225811 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr1976 | ||||||||
| Expr1016396 | |||||||||
| Expr1031895 | |||||||||
| Expr1157956 | |||||||||
| Expr2014821 | |||||||||
| Expr2033055 | |||||||||
| Drives_construct | WBCnstr00007282 | ||||||||
| WBCnstr00007284 | |||||||||
| WBCnstr00007290 | |||||||||
| WBCnstr00010554 | |||||||||
| Construct_product | WBCnstr00007282 | ||||||||
| WBCnstr00007287 | |||||||||
| WBCnstr00010554 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (93) | |||||||||
| Interaction (20) | |||||||||
| WBProcess | WBbiopr:00000072 | ||||||||
| Map_info | Map | III | Position | 8.74346 | Error | 0.028434 | |||
| Positive | Positive_clone | T28D6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4570 | |||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
