WormBase Tree Display for Gene: WBGene00004039
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| WBGene00004039 | Evidence | Person_evidence | WBPerson51 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R05G6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | plc-4 | Person_evidence | WBPerson51 | |||||
| Sequence_name | R05G6.8 | ||||||||
| Molecular_name | R05G6.8 | ||||||||
| R05G6.8.1 | |||||||||
| CE07421 | |||||||||
| Other_name | CELE_R05G6.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | plc-4 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | plc | ||||||||
| Allele (41) | |||||||||
| Strain | WBStrain00031874 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00001177 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004036 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004037 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004038 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004045 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | plc-4 encodes a phospholipase C delta homolog. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 05 Jun 2013 00:00:00 | ||||||||
| Automated_description | Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling and release of sequestered calcium ion into cytosol. Expressed in vas deferens. Human ortholog(s) of this gene implicated in Alzheimer's disease; nonsyndromic congenital nail disorder 3; and spermatogenic failure 17. Is an ortholog of human PLCD3 (phospholipase C delta 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9060) | ||||
| DOID:0070174 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19218) | ||||||
| DOID:0080081 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9060) | ||||||
| Molecular_info | Corresponding_CDS | R05G6.8 | |||||||
| Corresponding_transcript | R05G6.8.1 | ||||||||
| Other_sequence (68) | |||||||||
| Associated_feature | WBsf651920 | ||||||||
| WBsf651921 | |||||||||
| WBsf668033 | |||||||||
| WBsf996996 | |||||||||
| WBsf996997 | |||||||||
| WBsf1017726 | |||||||||
| WBsf230284 | |||||||||
| WBsf230285 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00078901 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00051328 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084143 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084149 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034630 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063867 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017469 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12668 | ||||||||
| Expr1016713 | |||||||||
| Expr1031940 | |||||||||
| Expr1155021 | |||||||||
| Expr2014954 | |||||||||
| Expr2033189 | |||||||||
| Drives_construct | WBCnstr00022589 | ||||||||
| WBCnstr00035727 | |||||||||
| Construct_product | WBCnstr00035727 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (76) | |||||||||
| Interaction | WBInteraction000347668 | ||||||||
| WBInteraction000363076 | |||||||||
| WBInteraction000370251 | |||||||||
| WBInteraction000388265 | |||||||||
| WBInteraction000388270 | |||||||||
| WBInteraction000411198 | |||||||||
| WBInteraction000415506 | |||||||||
| WBInteraction000566163 | |||||||||
| WBInteraction000567653 | |||||||||
| WBInteraction000579666 | |||||||||
| Map_info | Map | IV | Position | 3.34156 | Error | 0.000749 | |||
| Positive | Positive_clone | R05G6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4563 | |||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
