WormBase Tree Display for Gene: WBGene00004145
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| WBGene00004145 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pqn-62 | Person_evidence | WBPerson625 | |||||
| Sequence_name | T03G11.1 | ||||||||
| Molecular_name | T03G11.1b | ||||||||
| T03G11.1b.1 | |||||||||
| CE50202 | |||||||||
| T03G11.1c | |||||||||
| CE50267 | |||||||||
| T03G11.1d | |||||||||
| CE50306 | |||||||||
| T03G11.1c.1 | |||||||||
| T03G11.1d.1 | |||||||||
| Other_name | CELE_T03G11.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | pqn-62 | ||||||||
| DB_info | Database | AceView | gene | XF821 | |||||
| WormQTL | gene | WBGene00004145 | |||||||
| WormFlux | gene | WBGene00004145 | |||||||
| NDB | locus_tag | CELE_T03G11.1 | |||||||
| NCBI | gene | 180789 | |||||||
| RefSeq | protein | NM_001313445.3 | |||||||
| NM_001313446.4 | |||||||||
| NM_001380960.1 | |||||||||
| TrEMBL | UniProtAcc | A0A0K3ATD0 | |||||||
| A0A0K3AVN9 | |||||||||
| A0A0K3AYL9 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A0K3ATD0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqn | ||||||||
| Allele (148) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00035065 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00162157 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00122284 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| WBGene00051717 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WBGene00093025 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||||
| WBGene00225783 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
| Cni-pqn-62 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold629.g14600 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| chrX_pilon.g19034 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00240665 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in Cappppv; Cpppppv; body wall muscle cell; head mesodermal cell; and muscle cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including Tunicamycin; stavudine; and Zidovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: SAP domain superfamily. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T03G11.1b | |||||||
| T03G11.1c | |||||||||
| T03G11.1d | |||||||||
| Corresponding_CDS_history | T03G11.1:wp245 | ||||||||
| T03G11.1a:wp272 | |||||||||
| Corresponding_transcript | T03G11.1b.1 | ||||||||
| T03G11.1c.1 | |||||||||
| T03G11.1d.1 | |||||||||
| Other_sequence | JI476589.1 | ||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052302 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018087 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025481 | ||||||||
| Expr1032016 | |||||||||
| Expr1155936 | |||||||||
| Expr2015062 | |||||||||
| Expr2033297 | |||||||||
| Drives_construct | WBCnstr00035671 | ||||||||
| Construct_product | WBCnstr00035671 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (175) | |||||||||
| Interaction | WBInteraction000217929 | ||||||||
| WBInteraction000321163 | |||||||||
| WBInteraction000363034 | |||||||||
| WBInteraction000436951 | |||||||||
| WBInteraction000462340 | |||||||||
| Map_info | Map | X | Position | -6.03454 | |||||
| Positive | Positive_clone | T03G11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
