WormBase Tree Display for Gene: WBGene00004188
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| WBGene00004188 | SMap | S_parent | Sequence | W07E6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | prp-21 | |||||||
| Sequence_name | W07E6.4 | ||||||||
| Molecular_name | W07E6.4 | ||||||||
| W07E6.4.1 | |||||||||
| CE17296 | |||||||||
| Other_name | Ceprp21 | Accession_evidence | EMBL | U09415 | |||||
| CELE_W07E6.4 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | prp-21 | ||||||||
| DB_info | Database | AceView | gene | 2A779 | |||||
| WormQTL | gene | WBGene00004188 | |||||||
| WormFlux | gene | WBGene00004188 | |||||||
| NDB | locus_tag | CELE_W07E6.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004188|UniProtKB=G5ECL3 | |||||||
| family | PTHR15316 | ||||||||
| NCBI | gene | 173440 | |||||||
| RefSeq | protein | NM_061345.10 | |||||||
| TREEFAM | TREEFAM_ID | TF105705 | |||||||
| TrEMBL | UniProtAcc | G5ECL3 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECL3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | prp | ||||||||
| Allele (111) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (41) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA cis splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U2 snRNP; U2-type prespliceosome; and catalytic step 2 spliceosome. Is an ortholog of human SF3A1 (splicing factor 3a subunit 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W07E6.4 | |||||||
| Corresponding_transcript | W07E6.4.1 | ||||||||
| Other_sequence (62) | |||||||||
| Associated_feature | WBsf986419 | ||||||||
| WBsf986420 | |||||||||
| WBsf1011401 | |||||||||
| WBsf1011402 | |||||||||
| WBsf220758 | |||||||||
| Experimental_info | RNAi_result (36) | ||||||||
| Expr_pattern | Expr16154 | ||||||||
| Expr1014196 | |||||||||
| Expr1032048 | |||||||||
| Expr1158486 | |||||||||
| Expr2015110 | |||||||||
| Expr2033348 | |||||||||
| Antibody | WBAntibody00001787 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (98) | |||||||||
| Interaction (225) | |||||||||
| Map_info | Map | II | Position | -15.6017 | Error | 0.001024 | |||
| Positive | Positive_clone | W07E6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002077 | ||||||||
| WBPaper00026593 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046427 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064651 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
