WormBase Tree Display for Gene: WBGene00004213
expand all nodes | collapse all nodes | view schema
| WBGene00004213 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ptp-1 | Person_evidence | WBPerson250 | |||||
| Sequence_name | C48D5.2 | ||||||||
| Molecular_name | C48D5.2a | ||||||||
| C48D5.2a.1 | |||||||||
| CE17578 | |||||||||
| C48D5.2b | |||||||||
| CE23603 | |||||||||
| C48D5.2c | |||||||||
| CE31450 | |||||||||
| C48D5.2b.1 | |||||||||
| C48D5.2c.1 | |||||||||
| Other_name | nemPTP | Accession_evidence | EMBL | M38013 | |||||
| CELE_C48D5.2 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | ptp-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptp | ||||||||
| Allele (450) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (38) | |||||||||
| Paralog (64) | |||||||||
| Structured_description | Concise_description | ptp-1 encodes a non-receptor tyrosine phosphatase containing Band 4.1 and PDZ domains that may function in linking cytoplasmic proteins and signaling molecules to sites on the plasma membrane; by homology, PTP-1 is predicted to function in cell signaling. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00004651 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 27 Jul 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein tyrosine phosphatase activity. Located in sarcoplasmic reticulum. Expressed in muscle cell; nerve ring; neurons; pharyngeal nervous system; and ventral nerve cord. Is an ortholog of human PTPN3 (protein tyrosine phosphatase non-receptor type 3) and PTPN4 (protein tyrosine phosphatase non-receptor type 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C48D5.2a | |||||||
| C48D5.2b | |||||||||
| C48D5.2c | |||||||||
| Corresponding_transcript | C48D5.2a.1 | ||||||||
| C48D5.2b.1 | |||||||||
| C48D5.2c.1 | |||||||||
| Other_sequence (56) | |||||||||
| Associated_feature (43) | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr9408 | ||||||||
| Expr10816 | |||||||||
| Expr14241 | |||||||||
| Expr1013354 | |||||||||
| Expr1032070 | |||||||||
| Expr1146727 | |||||||||
| Expr2015148 | |||||||||
| Expr2033386 | |||||||||
| Drives_construct | WBCnstr00017744 | ||||||||
| WBCnstr00040675 | |||||||||
| Construct_product | WBCnstr00013973 | ||||||||
| WBCnstr00017744 | |||||||||
| Microarray_results (40) | |||||||||
| Expression_cluster (171) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | III | Position | -5.32515 | Error | 0.078628 | |||
| Positive | Positive_clone | C48D5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024261 | ||||||||
| WBPaper00028430 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046417 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055646 | |||||||||
| Remark | C09D8.1 removed from here, to form ptp-3, see notes in 'ptp' gene class ptp [sdm 0107] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
