WormBase Tree Display for Gene: WBGene00004282
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| WBGene00004282 | SMap | S_parent | Sequence | Y45F3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rab-30 | Person_evidence | WBPerson451 | |||||
| Sequence_name | Y45F3A.2 | ||||||||
| Molecular_name | Y45F3A.2 | ||||||||
| Y45F3A.2.1 | |||||||||
| CE19165 | |||||||||
| Y45F3A.2.2 | |||||||||
| Other_name | CELE_Y45F3A.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rab-30 | ||||||||
| DB_info | Database | AceView | gene | 3L653 | |||||
| WormQTL | gene | WBGene00004282 | |||||||
| WormFlux | gene | WBGene00004282 | |||||||
| NDB | locus_tag | CELE_Y45F3A.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004282|UniProtKB=Q9XWZ3 | |||||||
| family | PTHR47977 | ||||||||
| NCBI | gene | 176476 | |||||||
| RefSeq | protein | NM_066927.6 | |||||||
| TrEMBL | UniProtAcc | Q9XWZ3 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XWZ3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rab | ||||||||
| Allele (105) | |||||||||
| Strain | WBStrain00003608 | ||||||||
| WBStrain00037780 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00103970 | ||||||||
| 00103971 | |||||||||
| 00103972 | |||||||||
| 00112604 | |||||||||
| 00112605 | |||||||||
| Contained_in_operon | CEOP3680 | ||||||||
| Ortholog (33) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | rab-30 encodes a rab related protein of the Ras GTPase superfamily. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in vesicle-mediated transport. Predicted to be located in Golgi cisterna and trans-Golgi network. Is an ortholog of human RAB30 (RAB30, member RAS oncogene family). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y45F3A.2 | |||||||
| Corresponding_transcript | Y45F3A.2.1 | ||||||||
| Y45F3A.2.2 | |||||||||
| Other_sequence (42) | |||||||||
| Associated_feature | WBsf645571 | ||||||||
| WBsf659518 | |||||||||
| WBsf979051 | |||||||||
| WBsf994075 | |||||||||
| WBsf1015816 | |||||||||
| WBsf225735 | |||||||||
| WBsf225736 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00091940 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037102 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037103 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002287 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056611 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00083362 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107753 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006318 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6978 | ||||||||
| Expr1015171 | |||||||||
| Expr1032118 | |||||||||
| Expr1160076 | |||||||||
| Expr2015222 | |||||||||
| Expr2033456 | |||||||||
| Drives_construct | WBCnstr00004058 | ||||||||
| WBCnstr00035589 | |||||||||
| Construct_product | WBCnstr00035589 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (76) | |||||||||
| Interaction | WBInteraction000122828 | ||||||||
| WBInteraction000169610 | |||||||||
| WBInteraction000309623 | |||||||||
| WBInteraction000324949 | |||||||||
| WBInteraction000349227 | |||||||||
| WBInteraction000367862 | |||||||||
| WBInteraction000405530 | |||||||||
| WBInteraction000419349 | |||||||||
| Map_info | Map | III | Position | 3.6054 | Error | 0.055505 | |||
| Positive | Positive_clone | Y45F3A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027296 | ||||||||
| WBPaper00029101 | |||||||||
| WBPaper00030935 | |||||||||
| WBPaper00032502 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
