WormBase Tree Display for Gene: WBGene00004338
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| WBGene00004338 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F58F6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rfc-2 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | F58F6.4 | ||||||||
| Molecular_name | F58F6.4 | ||||||||
| F58F6.4.1 | |||||||||
| CE17139 | |||||||||
| Other_name | CELE_F58F6.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rfc-2 | ||||||||
| DB_info | Database | AceView | gene | 4C117 | |||||
| WormQTL | gene | WBGene00004338 | |||||||
| WormFlux | gene | WBGene00004338 | |||||||
| NDB | locus_tag | CELE_F58F6.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004338|UniProtKB=O44175 | |||||||
| family | PTHR11669 | ||||||||
| NCBI | gene | 176946 | |||||||
| RefSeq | protein | NM_067668.7 | |||||||
| TREEFAM | TREEFAM_ID | TF300585 | |||||||
| TrEMBL | UniProtAcc | O44175 | |||||||
| UniProt_GCRP | UniProtAcc | O44175 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rfc | ||||||||
| Allele (279) | |||||||||
| Strain | WBStrain00002941 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00032147 | ||||||||
| 00032148 | |||||||||
| 00032149 | |||||||||
| 00032150 | |||||||||
| 00032151 | |||||||||
| 00112688 | |||||||||
| 00112689 | |||||||||
| 00112690 | |||||||||
| 00112691 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00004340 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004339 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018409 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rfc-2 encodes a member of the AAA family that are ATPases associated with DNA replication and has highest similarity to the mouse Replication factor C 40 kDa subunit, and affects embryonic viability, fertility, and locomotion in a large-scale RNAi screen. | Paper_evidence | WBPaper00006395 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP binding activity; ATP hydrolysis activity; and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Predicted to be involved in DNA repair and DNA-templated DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Is an ortholog of human RFC2 (replication factor C subunit 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F58F6.4 | |||||||
| Corresponding_transcript | F58F6.4.1 | ||||||||
| Other_sequence (64) | |||||||||
| Associated_feature | WBsf645789 | ||||||||
| WBsf659916 | |||||||||
| WBsf995405 | |||||||||
| WBsf995406 | |||||||||
| WBsf995407 | |||||||||
| WBsf995408 | |||||||||
| WBsf227934 | |||||||||
| WBsf227935 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00025752 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00111807 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033113 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015994 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049023 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027376 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1847 | ||||||||
| Expr6253 | |||||||||
| Expr1025337 | |||||||||
| Expr1032156 | |||||||||
| Expr1152762 | |||||||||
| Expr2015304 | |||||||||
| Expr2033538 | |||||||||
| Drives_construct | WBCnstr00003447 | ||||||||
| WBCnstr00035557 | |||||||||
| Construct_product | WBCnstr00035557 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (130) | |||||||||
| Interaction (161) | |||||||||
| Map_info | Map | IV | Position | -20.2734 | Error | 0.063595 | |||
| Positive | Positive_clone | F58F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Boulton S, Vidal M] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
