WormBase Tree Display for Gene: WBGene00004371
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WBGene00004371 | Evidence | Person_evidence | WBPerson1103 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y42H9B | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | rig-4 | Person_evidence | WBPerson1103 | |||||
Sequence_name | Y42H9B.2 | ||||||||
Molecular_name | Y42H9B.2 | ||||||||
Y42H9B.2.1 | |||||||||
CE33870 | |||||||||
Other_name | Y42H9B.b | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y42H9B.2 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | rig-4 | ||||||||
DB_info | Database | AceView | gene | 4I756 | |||||
WormQTL | gene | WBGene00004371 | |||||||
WormFlux | gene | WBGene00004371 | |||||||
NDB | locus_tag | CELE_Y42H9B.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004371|UniProtKB=Q9N3X8 | |||||||
family | PTHR13817 | ||||||||
NCBI | gene | 177597 | |||||||
RefSeq | protein | NM_068938.9 | |||||||
SwissProt | UniProtAcc | Q9N3X8 | |||||||
TREEFAM | TREEFAM_ID | TF316846 | |||||||
UniProt_GCRP | UniProtAcc | Q9N3X8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rig | ||||||||
Allele (169) | |||||||||
Strain | WBStrain00031841 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00094073 | ||||||||
00094074 | |||||||||
00094075 | |||||||||
00094076 | |||||||||
Ortholog (46) | |||||||||
Paralog (19) | |||||||||
Structured_description | Automated_description | Predicted to be involved in cell adhesion. Predicted to be located in membrane. Expressed in several structures, including DA neuron; excretory cell; somatic neurons; spermathecal-uterine junction; and vulva. Is an ortholog of human SDK1 (sidekick cell adhesion molecule 1) and SDK2 (sidekick cell adhesion molecule 2). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y42H9B.2 | |||||||
Corresponding_CDS_history | Y42H9B.2:wp98 | ||||||||
Corresponding_transcript | Y42H9B.2.1 | ||||||||
Other_sequence (19) | |||||||||
Associated_feature (21) | |||||||||
Experimental_info | RNAi_result | WBRNAi00056451 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00080536 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00056450 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1768 | ||||||||
Expr8847 | |||||||||
Expr1011118 | |||||||||
Expr1032184 | |||||||||
Expr1159924 | |||||||||
Expr2015353 | |||||||||
Expr2033587 | |||||||||
Drives_construct | WBCnstr00001455 | ||||||||
WBCnstr00001456 | |||||||||
WBCnstr00013557 | |||||||||
WBCnstr00035531 | |||||||||
Construct_product | WBCnstr00035531 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (156) | |||||||||
Interaction | WBInteraction000540415 | ||||||||
Map_info | Map | IV | Position | 3.57712 | Error | 0.001164 | |||
Positive | Positive_clone | Y42H9B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4932 | |||||||
4999 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00011412 | ||||||||
WBPaper00019313 | |||||||||
WBPaper00024200 | |||||||||
WBPaper00024722 | |||||||||
WBPaper00032446 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |