WormBase Tree Display for Gene: WBGene00004400
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| WBGene00004400 | Evidence | Paper_evidence | WBPaper00018136 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F26F4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rom-1 | Person_evidence | WBPerson232 | |||||
| Sequence_name | F26F4.3 | ||||||||
| Molecular_name | F26F4.3 | ||||||||
| F26F4.3.1 | |||||||||
| CE32392 | |||||||||
| Other_name | CELE_F26F4.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rom-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rom | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00002181 | ||||||||
| WBStrain00002349 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00065954 | ||||||||
| 00065955 | |||||||||
| 00065956 | |||||||||
| 00065957 | |||||||||
| 00065958 | |||||||||
| 00065959 | |||||||||
| 00065960 | |||||||||
| 00065961 | |||||||||
| 00112776 | |||||||||
| 00112777 | |||||||||
| Ortholog (49) | |||||||||
| Paralog | WBGene00004401 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004402 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004403 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004404 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable serine-type endopeptidase activity. Involved in positive regulation of vulval development. Predicted to be located in membrane. Expressed in several structures, including head and tail. Is an ortholog of human RHBDL1 (rhomboid like 1) and RHBDL3 (rhomboid like 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F26F4.3 | |||||||
| Corresponding_CDS_history | F26F4.3:wp88 | ||||||||
| Corresponding_transcript | F26F4.3.1 | ||||||||
| Other_sequence (19) | |||||||||
| Associated_feature | WBsf654956 | ||||||||
| WBsf992242 | |||||||||
| WBsf1014817 | |||||||||
| WBsf224824 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045675 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013963 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062581 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005108 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062577 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062582 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3457 | ||||||||
| Expr5877 | |||||||||
| Expr5878 | |||||||||
| Expr1021653 | |||||||||
| Expr1032209 | |||||||||
| Expr1149587 | |||||||||
| Expr2015406 | |||||||||
| Expr2033641 | |||||||||
| Drives_construct | WBCnstr00002935 | ||||||||
| WBCnstr00004459 | |||||||||
| WBCnstr00005190 | |||||||||
| WBCnstr00035510 | |||||||||
| Construct_product | WBCnstr00035510 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | III | Position | -2.38706 | Error | 0.002673 | |||
| Positive | Positive_clone | F26F4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00011463 | ||||||||
| WBPaper00011658 | |||||||||
| WBPaper00018136 | |||||||||
| WBPaper00018932 | |||||||||
| WBPaper00024876 | |||||||||
| WBPaper00027225 | |||||||||
| WBPaper00027275 | |||||||||
| WBPaper00027316 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
