WormBase Tree Display for Gene: WBGene00004403
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| WBGene00004403 | Evidence | Paper_evidence | WBPaper00018136 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y116A8C | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | rom-4 | Person_evidence | WBPerson232 | |||||
| Sequence_name | Y116A8C.16 | ||||||||
| Molecular_name (18) | |||||||||
| Other_name | CELE_Y116A8C.16 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rom-4 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00004403 | |||||
| WormFlux | gene | WBGene00004403 | |||||||
| NDB | locus_tag | CELE_Y116A8C.16 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004403|UniProtKB=H2KML1 | |||||||
| family | PTHR45965 | ||||||||
| NCBI | gene | 3565076 | |||||||
| RefSeq | protein | NM_001276901.3 | |||||||
| NM_001380565.1 | |||||||||
| NM_001083250.6 | |||||||||
| NM_001047549.4 | |||||||||
| NM_001380564.1 | |||||||||
| NM_001047548.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF312988 | |||||||
| TrEMBL | UniProtAcc | I2HAL3 | |||||||
| Q9U2V5 | |||||||||
| A0A0K3AXE4 | |||||||||
| Q2YS42 | |||||||||
| A0A0K3AS30 | |||||||||
| H2KML1 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KML1 | |||||||
| OMIM | gene | 614404 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 09 Jan 2009 16:56:15 | WBPerson4025 | Event | Acquires_merge | WBGene00013793 | ||||
| Acquires_merge | WBGene00013793 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rom | ||||||||
| Allele (429) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00000905 | ||||||||
| 00000906 | |||||||||
| 00000907 | |||||||||
| 00000908 | |||||||||
| 00000909 | |||||||||
| 00000910 | |||||||||
| 00000911 | |||||||||
| 00000912 | |||||||||
| 00112782 | |||||||||
| 00112783 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00004402 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020683 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00004400 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004401 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004404 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable serine-type endopeptidase activity. Predicted to be involved in regulation of epidermal growth factor receptor signaling pathway and regulation of protein secretion. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in palmoplantar keratoderma-esophageal carcinoma syndrome. Is an ortholog of human RHBDF1 (rhomboid 5 homolog 1) and RHBDF2 (rhomboid 5 homolog 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111506 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20788) | ||||
| Molecular_info | Corresponding_CDS | Y116A8C.16a | |||||||
| Y116A8C.16b | |||||||||
| Y116A8C.16c | |||||||||
| Y116A8C.16d | |||||||||
| Y116A8C.16e | |||||||||
| Y116A8C.16f | |||||||||
| Corresponding_CDS_history | Y116A8C.16:wp62 | ||||||||
| Y116A8C.16a:wp199 | |||||||||
| Y116A8C.16c:wp199 | |||||||||
| Corresponding_transcript | Y116A8C.16a.1 | ||||||||
| Y116A8C.16b.1 | |||||||||
| Y116A8C.16c.1 | |||||||||
| Y116A8C.16d.1 | |||||||||
| Y116A8C.16e.1 | |||||||||
| Y116A8C.16f.1 | |||||||||
| Other_sequence (52) | |||||||||
| Associated_feature | WBsf646597 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00055431 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055432 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001442 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026691 | ||||||||
| Expr1032210 | |||||||||
| Expr1158945 | |||||||||
| Expr2015409 | |||||||||
| Expr2033644 | |||||||||
| Microarray_results (41) | |||||||||
| Expression_cluster (108) | |||||||||
| Interaction (105) | |||||||||
| Map_info | Map | IV | Position | 15.9248 | Error | 0.008779 | |||
| Positive | Positive_clone | Y116A8C | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00011463 | ||||||||
| WBPaper00018136 | |||||||||
| WBPaper00018932 | |||||||||
| WBPaper00024876 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
