WormBase Tree Display for Gene: WBGene00004416
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| WBGene00004416 | SMap | S_parent | Sequence | F54C9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpl-5 | |||||||
| Sequence_name | F54C9.5 | ||||||||
| Molecular_name | F54C9.5 | ||||||||
| F54C9.5.1 | |||||||||
| CE02255 | |||||||||
| Other_name | CELE_F54C9.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | rpl-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpl | ||||||||
| Allele (13) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rpl5 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP2364 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | rpl-5 encodes a large ribosomal subunit L5 protein; by homology, RPL-5 is predicted to function in protein biosynthesis; in C. elegans RPL-5 activity is broadly required for embryonic, larval, germline, and vulval development, as well as normal body coloration, morphology, and postembryonic growth rates. | Paper_evidence | WBPaper00004540 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable 5S rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytoplasm; nucleus; and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Expressed in hyp7 syncytium; intestine; and pharyngeal cell. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 6; T-cell acute lymphoblastic leukemia; and glioblastoma. Is an ortholog of human RPL5 (ribosomal protein L5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3068 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10360) | ||||
| DOID:0111879 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10360) | ||||||
| DOID:5603 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10360) | ||||||
| Molecular_info | Corresponding_CDS | F54C9.5 | |||||||
| Corresponding_transcript | F54C9.5.1 | ||||||||
| Other_sequence (514) | |||||||||
| Associated_feature | WBsf644479 | ||||||||
| WBsf657983 | |||||||||
| WBsf221769 | |||||||||
| WBsf221770 | |||||||||
| WBsf221771 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Expr118 | ||||||||
| Expr1012109 | |||||||||
| Expr1032220 | |||||||||
| Expr1152075 | |||||||||
| Expr2015479 | |||||||||
| Expr2033714 | |||||||||
| Drives_construct | WBCnstr00035502 | ||||||||
| Construct_product | WBCnstr00035502 | ||||||||
| Regulate_expr_cluster | WBPaper00056293:rpl-5(0)-rpl-33(0)_downregulated | ||||||||
| WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated | |||||||||
| Antibody | WBAntibody00002838 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (164) | |||||||||
| Interaction (369) | |||||||||
| Map_info | Map | II | Position | 0.818291 | |||||
| Positive | Positive_clone | F54C9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
