WormBase Tree Display for Gene: WBGene00004444
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| WBGene00004444 | SMap | S_parent | Sequence | Y106G6H | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpl-30 | |||||||
| Sequence_name | Y106G6H.3 | ||||||||
| Molecular_name | Y106G6H.3a | ||||||||
| Y106G6H.3a.1 | |||||||||
| CE44850 | |||||||||
| Y106G6H.3c | |||||||||
| CE47526 | |||||||||
| Y106G6H.3b | |||||||||
| Y106G6H.3c.1 | |||||||||
| Y106G6H.3c.2 | |||||||||
| Other_name | CELE_Y106G6H.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rpl-30 | ||||||||
| DB_info | Database | AceView | gene | 1L13 | |||||
| WormQTL | gene | WBGene00004444 | |||||||
| WormFlux | gene | WBGene00004444 | |||||||
| NDB | locus_tag | CELE_Y106G6H.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004444|UniProtKB=Q9XWS4 | |||||||
| family | PTHR11449 | ||||||||
| NCBI | gene | 172921 | |||||||
| RefSeq | protein | NM_060327.8 | |||||||
| NM_001392932.1 | |||||||||
| NR_101614.1 | |||||||||
| TrEMBL | UniProtAcc | I2HAJ2 | |||||||
| Q9XWS4 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9XWS4 | |||||||
| RNAcentral | URSid | URS0000169CF8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpl | ||||||||
| Allele (12) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rpl30 using blastP | ||||||||
| Strain | WBStrain00037557 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00023929 | ||||||||
| 00023930 | |||||||||
| 00023931 | |||||||||
| 00023932 | |||||||||
| 00112892 | |||||||||
| Ortholog (41) | |||||||||
| Structured_description | Concise_description | rpl-30 encodes a large ribosomal subunit L30 protein; by homology, RPL-30 is predicted to function in protein biosynthesis; in C. elegans, loss of rpl-30 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities. | Paper_evidence | WBPaper00005654 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in determination of adult lifespan. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in herpes simplex. Is an ortholog of human RPL30 (ribosomal protein L30). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:8566 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10333) | ||||
| Molecular_info | Corresponding_CDS | Y106G6H.3a | |||||||
| Y106G6H.3c | |||||||||
| Corresponding_CDS_history | Y106G6H.3:wp214 | ||||||||
| Corresponding_transcript | Y106G6H.3b | ||||||||
| Y106G6H.3a.1 | |||||||||
| Y106G6H.3c.1 | |||||||||
| Y106G6H.3c.2 | |||||||||
| Other_sequence (270) | |||||||||
| Associated_feature | WBsf654820 | ||||||||
| WBsf656864 | |||||||||
| Experimental_info | RNAi_result (21) | ||||||||
| Expr_pattern | Expr1012423 | ||||||||
| Expr1032248 | |||||||||
| Expr1158812 | |||||||||
| Expr2015462 | |||||||||
| Expr2033697 | |||||||||
| Drives_construct | WBCnstr00035481 | ||||||||
| Construct_product | WBCnstr00035481 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (169) | |||||||||
| Interaction (284) | |||||||||
| Map_info | Map | I | Position | 5.03024 | Error | 0.002154 | |||
| Positive | Positive_clone | Y106G6H | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024230 | ||||||||
| WBPaper00024704 | |||||||||
| WBPaper00025088 | |||||||||
| WBPaper00029008 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
