WormBase Tree Display for Gene: WBGene00004455
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| WBGene00004455 | SMap | S_parent | Sequence | C09H10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpl-42 | |||||||
| Sequence_name | C09H10.1 | ||||||||
| Molecular_name | C09H10.1 | ||||||||
| C09H10.1.1 | |||||||||
| CE39131 | |||||||||
| Other_name | CELE_C09H10.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | rpl-42 | ||||||||
| DB_info | Database | AceView | gene | 2L383 | |||||
| WormQTL | gene | WBGene00004455 | |||||||
| WormFlux | gene | WBGene00004455 | |||||||
| NDB | locus_tag | CELE_C09H10.1 | |||||||
| NCBI | gene | 191758 | |||||||
| RefSeq | protein | NM_063972.5 | |||||||
| TrEMBL | UniProtAcc | Q17879 | |||||||
| UniProt_GCRP | UniProtAcc | Q17879 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpl | ||||||||
| Allele (26) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rpl42 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | chrII_pilon.g5870 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Enriched in AVK; germ line; and neurons based on RNA-seq studies. Is affected by several genes including rrf-3; pgl-1; and aak-2 based on tiling array; microarray; and RNA-seq studies. Is affected by eleven chemicals including methylmercuric chloride; Tunicamycin; and D-glucose based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C09H10.1 | |||||||
| Corresponding_CDS_history | C09H10.1:wp57 | ||||||||
| C09H10.1:wp149 | |||||||||
| Corresponding_transcript | C09H10.1.1 | ||||||||
| Associated_feature | WBsf989619 | ||||||||
| WBsf989620 | |||||||||
| WBsf222091 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00028748 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00040251 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010558 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026218 | ||||||||
| Expr1144321 | |||||||||
| Expr2015476 | |||||||||
| Expr2033711 | |||||||||
| Drives_construct | WBCnstr00035472 | ||||||||
| Construct_product | WBCnstr00035472 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | II | Position | 3.18949 | Error | 0.009838 | |||
| Positive | Positive_clone | C09H10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
