WormBase Tree Display for Gene: WBGene00004480
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| WBGene00004480 | SMap | S_parent | Sequence | F40F11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rps-11 | |||||||
| Sequence_name | F40F11.1 | ||||||||
| Molecular_name | F40F11.1 | ||||||||
| F40F11.1.1 | |||||||||
| CE05860 | |||||||||
| Other_name | CELE_F40F11.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rps-11 | ||||||||
| DB_info | Database | AceView | gene | 4M367 | |||||
| WormQTL | gene | WBGene00004480 | |||||||
| WormFlux | gene | WBGene00004480 | |||||||
| NDB | locus_tag | CELE_F40F11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004480|UniProtKB=Q20206 | |||||||
| family | PTHR10744 | ||||||||
| NCBI | gene | 178083 | |||||||
| RefSeq | protein | NM_069785.8 | |||||||
| TREEFAM | TREEFAM_ID | TF300126 | |||||||
| TrEMBL | UniProtAcc | Q20206 | |||||||
| UniProt_GCRP | UniProtAcc | Q20206 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele (14) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps11 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00067503 | ||||||||
| 00067504 | |||||||||
| 00067505 | |||||||||
| 00067506 | |||||||||
| 00067507 | |||||||||
| 00067508 | |||||||||
| 00112981 | |||||||||
| 00112982 | |||||||||
| 00112983 | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | rps-11 encodes a small ribosomal subunit S11 protein; by homology, RPS-11 is predicted to function in protein biosynthesis; in C. elegans, RPS-11 activity is required for embryonic and germline development, as well as the overall health of the animal; loss of rps-11 activity in adult animals extends lifespan. | Paper_evidence | WBPaper00004540 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00029008 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 25 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of ribosome. Involved in determination of adult lifespan. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is an ortholog of human RPS11 (ribosomal protein S11). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F11.1 | |||||||
| Corresponding_transcript | F40F11.1.1 | ||||||||
| Other_sequence (352) | |||||||||
| Associated_feature | WBsf646393 | ||||||||
| WBsf646394 | |||||||||
| WBsf646395 | |||||||||
| WBsf660743 | |||||||||
| WBsf229177 | |||||||||
| Experimental_info | RNAi_result (23) | ||||||||
| Expr_pattern | Expr1019740 | ||||||||
| Expr1032283 | |||||||||
| Expr1150720 | |||||||||
| Expr2015505 | |||||||||
| Expr2033740 | |||||||||
| Drives_construct | WBCnstr00035453 | ||||||||
| Construct_product | WBCnstr00035453 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (149) | |||||||||
| Interaction (291) | |||||||||
| Map_info | Map | IV | Position | 5.03835 | |||||
| Positive | Positive_clone | F40F11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025088 | ||||||||
| WBPaper00029008 | |||||||||
| WBPaper00029254 | |||||||||
| WBPaper00035215 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00064934 | |||||||||
| WBPaper00065026 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
