WormBase Tree Display for Gene: WBGene00004567
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| WBGene00004567 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F31C3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rrn-2.1 | |||||||
| Sequence_name | F31C3.11 | ||||||||
| Molecular_name | F31C3.11 | ||||||||
| Other_name | CELE_F31C3.11 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rrn-2.1 | ||||||||
| DB_info | Database | NDB | locus_tag | CELE_F31C3.11 | |||||
| NCBI | gene | 13183155 | |||||||
| RefSeq | protein | NR_000057.1 | |||||||
| RNAcentral | URSid | URS00001218EE | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001637 | |||||||
| Gene_class | rrn | ||||||||
| Allele | WBVar00264435 | ||||||||
| WBVar02148058 | |||||||||
| WBVar00259860 | |||||||||
| WBVar00142722 | |||||||||
| WBVar02123655 | |||||||||
| WBVar00257417 | |||||||||
| In_cluster | rDNA_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | rrn-2.1 (F31C3.11) encodes a 5.8s ribosomal RNA (rRNA), a non-coding component of the large ribosomal subunit. This is cleaved from a 45S precursor transcribed by RNA polymerase I; As this forms a major component of the ribosome, it is essential for all protein synthesis in the cell. | Curator_confirmed | WBPerson1983 | |||||
| Date_last_updated | 24 Sep 2013 00:00:00 | ||||||||
| Automated_description | Enriched in I4 neuron; PDB; distal tip cell; excretory gland cell; and germ line based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; skn-1; and npr-1 based on RNA-seq studies. Is affected by nine chemicals including Ethanol; Nitric Oxide; and 1-methylnicotinamide based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | F31C3.11 | |||||||
| Other_sequence (84) | |||||||||
| Experimental_info | Expression_cluster (84) | ||||||||
| Map_info | Map | I | Position | 29.9789 | |||||
| Positive | Positive_clone | F31C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | 5.88s ribosomal RNA | ||||||||
| rrn-1 was previously used to designate the whole ribosomal DNA tandem array. Due to gene name assignment to each ribosomal RNA subunits within the cluster, the phenotypic descriptions, mapping data and allele information of rrn-1 have been attached to rDNA_cluster, which contains all the rrn loci | CGC_data_submission | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
