WormBase Tree Display for Gene: WBGene00004744
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| WBGene00004744 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | D2013 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | scp-1 | Person_evidence | WBPerson1122 | |||||
| Sequence_name | D2013.8 | ||||||||
| Molecular_name | D2013.8a | ||||||||
| D2013.8a.1 | |||||||||
| CE32616 | |||||||||
| D2013.8b | |||||||||
| CE37819 | |||||||||
| D2013.8b.1 | |||||||||
| D2013.8b.2 | |||||||||
| D2013.8b.3 | |||||||||
| D2013.8b.4 | |||||||||
| D2013.8b.5 | |||||||||
| Other_name | CELE_D2013.8 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | scp-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scp | ||||||||
| Allele (68) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Contained_in_operon | CEOP2424 | ||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00003009 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00004767 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021467 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | scp-1 encodes PTC-related protein that contains a sterol-sensing domain related to human Sterol regulatory element binding protein (SREBP) cleavage activating protein. | Paper_evidence | WBPaper00004265 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable sterol binding activity. Predicted to be involved in regulation of cholesterol biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of SREBP-SCAP complex. Is an ortholog of human SCAP (SREBF chaperone). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D2013.8a | |||||||
| D2013.8b | |||||||||
| Corresponding_CDS_history | D2013.8:wp91 | ||||||||
| Corresponding_transcript | D2013.8a.1 | ||||||||
| D2013.8b.1 | |||||||||
| D2013.8b.2 | |||||||||
| D2013.8b.3 | |||||||||
| D2013.8b.4 | |||||||||
| D2013.8b.5 | |||||||||
| Other_sequence | ACC41055_1 | ||||||||
| Oden_isotig23236 | |||||||||
| CR07364 | |||||||||
| CR07231 | |||||||||
| CRC06425_1 | |||||||||
| JI164896.1 | |||||||||
| EY462402.1 | |||||||||
| Acan_isotig04028 | |||||||||
| Associated_feature | WBsf658097 | ||||||||
| WBsf658098 | |||||||||
| WBsf989026 | |||||||||
| WBsf221877 | |||||||||
| WBsf221878 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012565 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030383 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007970 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007499 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043445 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076258 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001489 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026652 | ||||||||
| Expr1032342 | |||||||||
| Expr1147440 | |||||||||
| Expr2015646 | |||||||||
| Expr2033878 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction | WBInteraction000400893 | ||||||||
| WBInteraction000401371 | |||||||||
| WBInteraction000429672 | |||||||||
| WBInteraction000446737 | |||||||||
| WBInteraction000566490 | |||||||||
| WBInteraction000566769 | |||||||||
| Map_info | Map | II | Position | 1.2798 | Error | 0.002801 | |||
| Positive | Positive_clone | D2013 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004265 | ||||||||
| WBPaper00026841 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
