WormBase Tree Display for Gene: WBGene00004753
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| WBGene00004753 | SMap | S_parent | Sequence | Y106G6H | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sec-8 | Person_evidence | WBPerson297 | |||||
| Sequence_name | Y106G6H.7 | ||||||||
| Molecular_name | Y106G6H.7 | ||||||||
| Y106G6H.7.1 | |||||||||
| CE32512 | |||||||||
| Other_name | CELE_Y106G6H.7 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | sec-8 | ||||||||
| DB_info | Database | AceView | gene | 1L27 | |||||
| WormQTL | gene | WBGene00004753 | |||||||
| WormFlux | gene | WBGene00004753 | |||||||
| NDB | locus_tag | CELE_Y106G6H.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004753|UniProtKB=Q9XWS2 | |||||||
| family | PTHR14146 | ||||||||
| NCBI | gene | 172924 | |||||||
| RefSeq | protein | NM_060331.9 | |||||||
| SwissProt | UniProtAcc | Q9XWS2 | |||||||
| TREEFAM | TREEFAM_ID | TF313954 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XWS2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sec | ||||||||
| Allele (61) | |||||||||
| Strain | WBStrain00037475 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP1608 | ||||||||
| Ortholog (37) | |||||||||
| Structured_description | Concise_description | sec-8 encodes an ortholog of S. cerevisiae SEC8, a component of the exocyst complex; sec-8 is required for endocytosis, normal cellular morphology in the intestine, normal pharyngeal morphology, and growth at normal rates during development. | Paper_evidence | WBPaper00004883 | |||||
| WBPaper00040399 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 16 Nov 2011 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in Golgi to plasma membrane transport; chemical synaptic transmission; and exocytosis. Predicted to be located in growth cone membrane and synapse. Predicted to be part of exocyst. Expressed in embryonic cell; excretory canal; and hypodermis. Is an ortholog of human EXOC4 (exocyst complex component 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y106G6H.7 | |||||||
| Corresponding_CDS_history | Y106G6H.7:wp90 | ||||||||
| Corresponding_transcript | Y106G6H.7.1 | ||||||||
| Other_sequence (58) | |||||||||
| Associated_feature | WBsf643681 | ||||||||
| WBsf656865 | |||||||||
| WBsf218428 | |||||||||
| WBsf218429 | |||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr11913 | ||||||||
| Expr12502 | |||||||||
| Expr1018317 | |||||||||
| Expr1032350 | |||||||||
| Expr1158816 | |||||||||
| Expr2015721 | |||||||||
| Expr2033953 | |||||||||
| Drives_construct | WBCnstr00019547 | ||||||||
| WBCnstr00019550 | |||||||||
| WBCnstr00021263 | |||||||||
| WBCnstr00035409 | |||||||||
| Construct_product | WBCnstr00019547 | ||||||||
| WBCnstr00019550 | |||||||||
| WBCnstr00021263 | |||||||||
| WBCnstr00035409 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (81) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | I | Position | 5.04341 | Error | 0.002856 | |||
| Positive | Positive_clone | Y106G6H | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
