WormBase Tree Display for Gene: WBGene00004913
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| WBGene00004913 | SMap | S_parent | Sequence | Y38C1BA | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | snn-1 | |||||||
| Sequence_name | Y38C1BA.2 | ||||||||
| Molecular_name | Y38C1BA.2a | ||||||||
| Y38C1BA.2a.1 | |||||||||
| CE28520 | |||||||||
| Y38C1BA.2b | |||||||||
| CE31645 | |||||||||
| Y38C1BA.2a.2 | |||||||||
| Y38C1BA.2a.3 | |||||||||
| Y38C1BA.2a.4 | |||||||||
| Y38C1BA.2b.1 | |||||||||
| Other_name | syn | Accession_evidence | EMBL | AF192746 | |||||
| CELE_Y38C1BA.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | snn-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snn | ||||||||
| Allele (260) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (42) | |||||||||
| Structured_description | Concise_description | snn-1 encodes the C. elegans synapsin ortholog; snn-1 is required for proper synaptic function, as loss of snn-1 results in a decrease in acetylcholine release; SNN-1::GFP reporters are expressed in neurons and exhibit patterns consistent with localization to vesicles in presynaptic regions. | Paper_evidence | WBPaper00026667 | |||||
| WBPaper00028808 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 03 Sep 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP binding activity. Involved in neuromuscular synaptic transmission. Located in presynaptic periactive zone. Expressed in epithelial cell and nervous system. Human ortholog(s) of this gene implicated in several diseases, including X-linked epilepsy with variable learning disabilities and behavior disorders; major depressive disorder; and non-syndromic X-linked intellectual disability 50. Is an ortholog of human SYN3 (synapsin III). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112029 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11494) | ||||
| DOID:1470 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11494) | ||||||
| DOID:0112122 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11494) | ||||||
| DOID:5419 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11495) | ||||||
| Molecular_info | Corresponding_CDS | Y38C1BA.2a | |||||||
| Y38C1BA.2b | |||||||||
| Corresponding_transcript | Y38C1BA.2a.1 | ||||||||
| Y38C1BA.2a.2 | |||||||||
| Y38C1BA.2a.3 | |||||||||
| Y38C1BA.2a.4 | |||||||||
| Y38C1BA.2b.1 | |||||||||
| Other_sequence | Oden_isotig23771 | ||||||||
| CBC06607_1 | |||||||||
| Oden_isotig28596 | |||||||||
| Dviv_isotig34656 | |||||||||
| HBC23627_1 | |||||||||
| EX910972.1 | |||||||||
| Associated_feature | WBsf716770 | ||||||||
| WBsf995542 | |||||||||
| WBsf1016792 | |||||||||
| WBsf229783 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr3562 | ||||||||
| Expr4962 | |||||||||
| Expr4972 | |||||||||
| Expr15242 | |||||||||
| Expr1019671 | |||||||||
| Expr1159519 | |||||||||
| Expr2015955 | |||||||||
| Expr2034190 | |||||||||
| Construct_product | WBCnstr00005438 | ||||||||
| WBCnstr00011486 | |||||||||
| WBCnstr00012371 | |||||||||
| WBCnstr00012381 | |||||||||
| WBCnstr00014588 | |||||||||
| WBCnstr00017095 | |||||||||
| WBCnstr00021852 | |||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (121) | |||||||||
| Interaction (38) | |||||||||
| Map_info | Map | IV | Position | -15.9139 | Error | 0.054711 | |||
| Positive | Positive_clone | Y38C1BA | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Sequence connection from [Kao T, Greengard P] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
