WormBase Tree Display for Gene: WBGene00005005

WBGene00005005 Evidence: Author_evidence: Patthy L
      Hodgkin JA
  SMap: S_parent: Sequence: K04A8
  Identity: Version: 2
    Name: CGC_name: spp-20
      Sequence_name: K04A8.8
      Molecular_name: K04A8.8
        K04A8.8.1
        CE52372
      Other_name: CELE_K04A8.8 Accession_evidence: NDB BX284605
      Public_name: spp-20
    DB_info: Database: AceView gene 5H36
        WormQTL gene WBGene00005005
        WormFlux gene WBGene00005005
        NDB locus_tag CELE_K04A8.8
        NCBI gene 34700636
        RefSeq protein NM_001356667.4
        TREEFAM TREEFAM_ID TF322179
        TrEMBL UniProtAcc Q94255
        UniProt_GCRP UniProtAcc Q94255
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:37 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 21 Sep 2017 14:34:34 WBPerson4025 Event: Split_into: WBGene00271815
      Split_into: WBGene00271815
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: spp
    Allele (14)
    RNASeq_FPKM (74)
    Ortholog (11)
    Paralog: WBGene00004996 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Concise_description: spp-20 encodes a protein containing two saposin B-like domains; by homology SPP-20 may function in lipid degradation and membrane digestion. Curator_confirmed: WBPerson1843
          Date_last_updated: 07 Sep 2011 00:00:00
      Automated_description: Enriched in dopaminergic neurons and sensory neurons based on tiling array and RNA-seq studies. Is affected by several genes including daf-2; age-1; and let-60 based on microarray; tiling array; and RNA-seq studies. Is affected by seventeen chemicals including diallyl trisulfide; Tunicamycin; and D-glucose based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Saposin B type domain and Saposin-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K04A8.8
    Corresponding_CDS_history: K04A8.8:wp261
    Corresponding_transcript: K04A8.8.1
  Experimental_info: RNAi_result: WBRNAi00049877 Inferred_automatically: RNAi_primary
      WBRNAi00016575 Inferred_automatically: RNAi_primary
      WBRNAi00103433 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018352
      Expr1153582
      Expr2016076
      Expr2034312
    Drives_construct: WBCnstr00035274
    Construct_product: WBCnstr00035274
    Microarray_results: SMD_K04A8.8
      181475_at
      Aff_K04A8.8
      GPL14144_K04A8.8_223-282_0.885_18_A
    Expression_cluster (127)
    Interaction (77)
  Map_info: Map: V Position: 0.084224 Error: 0.003932
    Positive: Positive_clone: K04A8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024209
    WBPaper00040160
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene