WormBase Tree Display for Gene: WBGene00005067
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| WBGene00005067 | SMap | S_parent | Sequence | C27D6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | CGC_name | srb-2 | Person_evidence | WBPerson42 | ||||||
| Sequence_name | C27D6.9 | |||||||||
| Molecular_name | C27D6.9 | |||||||||
| Other_name | CELE_C27D6.9 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | srb-2 | |||||||||
| DB_info | Database | AceView | gene | 2F456 | ||||||
| WormQTL | gene | WBGene00005067 | ||||||||
| WormFlux | gene | WBGene00005067 | ||||||||
| NDB | locus_tag | CELE_C27D6.9 | ||||||||
| NCBI | gene | 191784 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 21 Oct 2019 15:24:00 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | srb | |||||||||
| Allele | WBVar01499702 | |||||||||
| WBVar00223596 | ||||||||||
| WBVar01498435 | ||||||||||
| WBVar00254710 | ||||||||||
| WBVar00730420 | ||||||||||
| WBVar00730421 | ||||||||||
| WBVar00730422 | ||||||||||
| WBVar00365594 | ||||||||||
| WBVar00365595 | ||||||||||
| WBVar01959986 | ||||||||||
| Legacy_information | [C.elegansII] NMK. Encodes predicted serpentine receptor. srb-1 to srb-5 possible operon. [Troemel et al. 1995; CX] | |||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00057418 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| TreeFam | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00025412 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| OMA | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00125294 | Caenorhabditis japonica | From_analysis | OMA | |||||||
| WBGene00126565 | Caenorhabditis japonica | From_analysis | OMA | |||||||
| Inparanoid_8 | ||||||||||
| Paralog (43) | ||||||||||
| Structured_description | Automated_description | Enriched in neurons based on RNA-seq studies. Is affected by several genes including clk-1; ain-1; and cyc-1 based on microarray; tiling array; and RNA-seq studies. Is affected by resveratrol based on microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | C27D6.9:wp140 | ||||||||
| C27D6.9:wp274 | ||||||||||
| Corresponding_pseudogene | C27D6.9 | |||||||||
| Experimental_info | Expr_pattern | Expr1019317 | ||||||||
| Expr1145389 | ||||||||||
| Expr2016184 | ||||||||||
| Drives_construct | WBCnstr00007803 | |||||||||
| WBCnstr00035223 | ||||||||||
| Construct_product | WBCnstr00035223 | |||||||||
| Microarray_results (16) | ||||||||||
| Expression_cluster (23) | ||||||||||
| Interaction (42) | ||||||||||
| Map_info | Map | II | Position | -1.96014 | Error | 0.002308 | ||||
| Positive | Positive_clone | C27D6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00002314 | |||||||||
| WBPaper00015440 | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
